Project name: 406

Status: done

Started: 2026-01-20 06:29:04
Settings
Chain sequence(s) H: EVQLVESGGGLVQPGGSLRLSCAASVSGDAPPAIGKYYMHWVRQAPGKGLEWVGLIAGGEDGITIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVYYCARAPFGGAAYIEWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTH
L: DIQMTQSPSSLSASVGDRVTITCSGGSGADIAWYQQKPGKAPKVLIYNGSLPPGVPSRFSGSGSGTDYTLTISSLQPEDFATYYCAACTRKLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:08:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:12)
Show buried residues

Minimal score value
-3.2923
Maximal score value
1.4379
Average score
-0.7505
Total score value
-331.7323

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.3446
2 V H -1.3325
3 Q H -1.5278
4 L H 0.0000
5 V H 0.0831
6 E H 0.0000
7 S H -0.4896
8 G H -0.7301
9 G H -0.3675
10 G H -0.2441
11 L H -0.1025
12 V H 0.0000
13 Q H -1.7256
14 P H -1.8979
15 G H -1.5425
16 G H -1.2320
17 S H -1.2951
18 L H -1.0146
19 R H -1.7080
20 L H 0.0000
21 S H -0.4079
22 C H 0.0000
23 A H -0.3478
24 A H 0.0000
25 S H -0.8083
26 V H -1.1297
27 S H -1.4977
28 G H -1.7969
29 D H -2.3262
30 A H -1.4504
31 P H -0.9989
32 P H -1.2918
33 A H -1.1058
34 I H 0.0000
35 G H -1.9305
36 K H -1.4691
37 Y H -0.2011
38 Y H 0.1489
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6989
45 A H -1.1468
46 P H -1.0218
47 G H -1.4950
48 K H -2.3224
49 G H -1.5152
50 L H 0.0000
51 E H -0.7966
52 W H 0.0000
53 V H 0.0000
54 G H 0.0000
55 L H 0.0000
56 I H 0.0000
57 A H 0.0000
58 G H -0.9610
59 G H 0.0000
60 E H -2.9342
61 D H -2.4414
62 G H -0.7947
63 I H 1.3031
64 T H 0.7866
65 I H 0.2860
66 Y H -0.7374
67 D H -1.6115
68 P H -1.9366
69 K H -2.5970
70 F H 0.0000
71 Q H -2.6617
72 D H -2.9140
73 R H -1.9891
74 A H 0.0000
75 T H -0.8625
76 I H 0.0000
77 S H -0.7696
78 A H -1.7650
79 D H -2.2781
80 N H -2.6615
81 S H -1.8286
82 K H -2.2594
83 N H -1.6782
84 T H 0.0000
85 A H 0.0000
86 Y H -0.4296
87 L H 0.0000
88 Q H -1.0064
89 M H 0.0000
90 N H -1.6108
91 S H -1.5012
92 L H 0.0000
93 R H -2.6987
94 A H -1.9179
95 E H -2.3556
96 D H 0.0000
97 T H -0.7886
98 A H 0.0000
99 V H 0.2296
100 Y H 0.0000
101 Y H 0.0000
102 C H 0.0000
103 A H 0.0000
104 R H 0.0000
105 A H 0.0000
106 P H 0.4722
107 F H 1.0475
108 G H 0.0866
109 G H -0.6142
110 A H 0.0000
111 A H 0.0528
112 Y H 0.4082
113 I H 0.0000
114 E H -0.5291
115 W H -0.5843
116 G H 0.0000
117 Q H -1.5501
118 G H 0.0000
119 T H -0.0591
120 L H 0.2663
121 V H 0.0000
122 T H -0.4992
123 V H 0.0000
124 S H -1.0532
125 S H -0.7362
126 A H -0.5222
127 S H -0.6435
128 T H -0.8658
129 K H -1.4171
130 G H -1.4408
131 P H 0.0000
132 S H -0.4320
133 V H 0.0000
134 F H 0.0000
135 P H -1.1505
136 L H 0.0000
137 A H -1.2085
138 P H 0.0000
139 S H -0.8904
140 S H -0.6346
141 K H -0.7957
142 S H 0.0000
143 T H -0.6062
144 S H -0.6802
145 G H -0.8292
146 G H -0.8916
147 T H -0.6036
148 A H 0.0000
149 A H 0.0000
150 L H 0.0000
151 G H 0.0000
152 C H 0.0000
153 L H 0.0000
154 V H 0.0000
155 K H 0.0000
156 D H -0.3920
157 Y H 0.0000
158 F H 0.0000
159 P H 0.0000
160 E H -0.5270
161 P H -0.6387
162 V H -0.6652
163 T H -0.5719
164 V H -0.4034
165 S H -0.4111
166 W H 0.0000
167 N H -0.7908
168 S H -0.6925
169 G H -0.5240
170 A H -0.2463
171 L H 0.0125
172 T H -0.1464
173 S H -0.1374
174 G H -0.1138
175 V H 0.2118
176 H H -0.2277
177 T H -0.1237
178 F H 0.0000
179 P H -0.1814
180 A H 0.3358
181 V H 0.7657
182 L H 1.4379
183 Q H 0.4435
184 S H -0.0468
185 S H -0.1697
186 G H 0.1238
187 L H 0.1808
188 Y H 0.5538
189 S H 0.0000
190 L H 0.0000
191 S H 0.0000
192 S H 0.0000
193 V H 0.0000
194 V H 0.0000
195 T H -0.0962
196 V H 0.0000
197 P H -0.5362
198 S H -0.5632
199 S H -0.5701
200 S H 0.0000
201 L H -0.7468
202 G H -0.9444
203 T H -0.6666
204 Q H -1.0836
205 T H -1.0782
206 Y H 0.0000
207 I H -1.3359
208 C H 0.0000
209 N H -1.5286
210 V H 0.0000
211 N H -1.9253
212 H H 0.0000
213 K H -2.7160
214 P H -1.5961
215 S H -1.8790
216 N H -2.5890
217 T H -2.0764
218 K H -2.7129
219 V H -1.6896
220 D H -2.6155
221 K H -2.2791
222 K H -2.5876
223 V H 0.0000
224 E H -2.8346
225 P H -1.8467
226 K H -2.3463
227 S H -1.6679
228 C H -1.2560
229 D H -2.6889
230 K H -2.6991
231 T H -1.6743
232 H H -1.8833
1 D L -1.9481
2 I L -1.0537
3 Q L -1.5570
4 M L 0.0000
5 T L -0.8546
6 Q L 0.0000
7 S L -0.7132
8 P L -0.7570
9 S L -1.0356
10 S L -1.1573
11 L L -0.8762
12 S L -1.2035
13 A L -1.1529
14 S L -1.0520
15 V L -0.3344
16 G L -0.8879
17 D L -2.0338
18 R L -2.4252
19 V L 0.0000
20 T L -0.6668
21 I L 0.0000
22 T L -0.6044
23 C L 0.0000
24 S L -1.1868
25 G L -0.9843
26 G L 0.0000
27 S L -1.1110
28 G L -1.2040
29 A L 0.0000
30 D L -1.6898
31 I L 0.0000
32 A L 0.0000
33 W L 0.0000
34 Y L 0.0000
35 Q L 0.0000
36 Q L 0.0000
37 K L -1.8152
38 P L -1.3817
39 G L -1.5834
40 K L -2.5567
41 A L -1.7265
42 P L 0.0000
43 K L -1.6729
44 V L 0.0000
45 L L 0.0000
46 I L 0.0000
47 Y L -0.4487
48 N L -1.6002
49 G L -1.2495
50 S L -0.4349
51 L L 0.0933
52 P L 0.0000
53 P L -0.3228
54 G L -0.4535
55 V L -0.2642
56 P L -0.3155
57 S L -0.3969
58 R L -0.6682
59 F L 0.0000
60 S L -0.3366
61 G L -0.5458
62 S L -1.0322
63 G L -1.3209
64 S L -1.4069
65 G L -1.3578
66 T L -1.4047
67 D L -2.1899
68 Y L -1.2101
69 T L -0.7241
70 L L 0.0000
71 T L -0.5862
72 I L 0.0000
73 S L -1.2946
74 S L -1.1868
75 L L 0.0000
76 Q L -1.1880
77 P L -1.7146
78 E L -2.2547
79 D L 0.0000
80 F L -1.2965
81 A L 0.0000
82 T L 0.0000
83 Y L 0.0000
84 Y L 0.0000
85 C L 0.0000
86 A L 0.0000
87 A L 0.0000
88 C L 0.0000
89 T L -1.4081
90 R L -1.8046
91 K L -1.6802
92 L L 0.0000
93 T L -0.8852
94 F L -0.4047
95 G L 0.0000
96 Q L -1.7109
97 G L 0.0000
98 T L 0.0000
99 K L -2.1362
100 V L 0.0000
101 E L -1.5089
102 I L 0.0000
103 K L -1.5126
104 R L -0.8582
105 T L -0.1181
106 V L 0.1806
107 A L -0.1020
108 A L -0.1101
109 P L 0.0000
110 S L -0.1325
111 V L -0.1139
112 F L 0.0000
113 I L 0.0000
114 F L 0.0000
115 P L -0.5023
116 P L 0.0000
117 S L -1.7389
118 D L -2.9796
119 E L -2.7391
120 Q L 0.0000
121 L L -2.1050
122 K L -2.7442
123 S L -1.7257
124 G L -1.2519
125 T L -0.9601
126 A L 0.0000
127 S L 0.0000
128 V L 0.0000
129 V L 0.0000
130 C L 0.0000
131 L L 0.0000
132 L L 0.0000
133 N L 0.0000
134 N L -0.7688
135 F L 0.0000
136 Y L 0.0000
137 P L -1.8041
138 R L -3.0908
139 E L -3.2923
140 A L -2.3815
141 K L -2.6446
142 V L -1.1958
143 Q L -0.7855
144 W L 0.0000
145 K L -0.3913
146 V L 0.0000
147 D L -1.4871
148 N L -1.2931
149 A L -0.1257
150 L L 0.7165
151 Q L -0.2167
152 S L -0.4475
153 G L -0.8287
154 N L -0.7053
155 S L -0.8461
156 Q L -0.7262
157 E L -1.3597
158 S L -0.5932
159 V L -0.5747
160 T L -0.9362
161 E L -1.8162
162 Q L 0.0000
163 D L -1.9714
164 S L -2.2502
165 K L -2.6487
166 D L -1.9348
167 S L 0.0000
168 T L 0.0000
169 Y L 0.0000
170 S L 0.0000
171 L L 0.0000
172 S L 0.0000
173 S L 0.0000
174 T L 0.0000
175 L L 0.0000
176 T L -0.3150
177 L L -0.5233
178 S L -1.0569
179 K L -1.7735
180 A L -1.6223
181 D L -2.2028
182 Y L 0.0000
183 E L -3.0360
184 K L -3.2047
185 H L -2.7876
186 K L -3.2148
187 V L -1.6294
188 Y L 0.0000
189 A L 0.0000
190 C L 0.0000
191 E L -0.7074
192 V L 0.0000
193 T L -1.2344
194 H L 0.0000
195 Q L -1.7933
196 G L -0.4750
197 L L -0.2593
198 S L -0.4575
199 S L -0.4108
200 P L -0.5103
201 V L 0.0941
202 T L -0.4129
203 K L -0.7485
204 S L -0.6801
205 F L 0.0000
206 N L -1.9238
207 R L -2.6020
208 G L -2.2040
209 E L -2.1649
210 C L -1.0589
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Laboratory of Theory of Biopolymers 2018