Project name: irma01-scfv

Status: done

Started: 2026-06-11 06:48:03
Settings
Chain sequence(s) A: QVQLQESGPGLVKPSETLSLTCTVSGFSLTIYGVHWVRQPPGCGLEWIGVIWSDASTDYNSALISRVTISKDTSKNQVFLKLSSVTAADTAVYYCAKEDYFGFDSWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTITCKASQSVSNDVVWYQQKPGKAPKLLIYYASNRYTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCQQDYSSPWTFGCGTKLEIK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:25)
Show buried residues

Minimal score value
-2.6527
Maximal score value
1.9298
Average score
-0.4937
Total score value
-119.9769

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4777
2 V A -1.0105
3 Q A -1.7310
4 L A 0.0000
5 Q A -1.2598
6 E A 0.0000
7 S A -0.5177
8 G A -0.3324
9 P A -0.0547
10 G A 0.3039
11 L A 0.5836
12 V A 0.0000
13 K A -1.4869
14 P A -1.1894
15 S A -1.3082
16 E A -1.9140
17 T A -1.3386
18 L A 0.0000
19 S A -0.7306
20 L A 0.0000
21 T A -0.3745
22 C A 0.0000
23 T A -1.0603
24 V A 0.0000
25 S A -1.2958
26 G A -1.0740
27 F A -0.0185
28 S A 0.5514
29 L A 0.0000
30 T A 0.5536
31 I A 1.9298
32 Y A 0.9577
33 G A 0.0000
34 V A 0.0000
35 H A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A 0.0000
39 Q A 0.0150
40 P A 0.0375
41 P A -0.2639
42 G A -0.2386
43 C A 0.4565
44 G A 0.0000
45 L A 0.0000
46 E A -0.3041
47 W A 0.0000
48 I A 0.0000
49 G A 0.0000
50 V A 0.0000
51 I A 0.0000
52 W A -0.1335
53 S A -0.0211
54 D A -1.3838
55 A A -0.9057
56 S A -0.7653
57 T A -0.6201
58 D A -0.5406
59 Y A 0.1940
60 N A 0.1122
61 S A 0.1053
62 A A 0.0863
63 L A 0.0000
64 I A 1.5431
65 S A 0.4793
66 R A -0.1640
67 V A 0.0000
68 T A -0.2273
69 I A 0.0000
70 S A -0.3489
71 K A -0.8094
72 D A -1.3087
73 T A -1.2581
74 S A -1.4139
75 K A -2.3484
76 N A -1.8218
77 Q A -1.3758
78 V A 0.0000
79 F A -0.1295
80 L A 0.0000
81 K A -1.0779
82 L A 0.0000
83 S A -1.0813
84 S A -1.0795
85 V A 0.0000
86 T A -0.5550
87 A A -0.1731
88 A A 0.0071
89 D A 0.0000
90 T A 0.3159
91 A A 0.0000
92 V A 0.6424
93 Y A 0.0000
94 Y A 0.0000
95 C A 0.0000
96 A A 0.0000
97 K A 0.0000
98 E A -0.3396
99 D A -0.2526
100 Y A 1.0913
101 F A 0.6216
102 G A 0.0000
103 F A 0.0000
104 D A -0.5024
105 S A -0.8245
106 W A -0.9462
107 G A 0.0000
108 Q A -1.7571
109 G A 0.0000
110 T A 0.2653
111 L A 1.4465
112 V A 0.0000
113 T A 0.4183
114 V A 0.0000
115 S A -0.5709
116 S A -0.9238
117 G A -1.0645
118 G A -1.1235
119 G A -1.0997
120 G A -1.1336
121 S A -0.9893
122 G A -1.0852
123 G A -1.1915
124 G A -1.1793
125 G A -1.2087
126 S A -1.0300
127 G A -1.2717
128 G A -1.2035
129 G A -1.1004
130 G A -1.2099
131 S A -1.0724
132 G A -1.1686
133 G A -1.2272
134 G A -1.1779
135 G A -1.1100
136 S A -1.0600
137 D A -1.2797
138 I A -1.0064
139 Q A -1.6852
140 M A 0.0000
141 T A -0.8306
142 Q A 0.0000
143 S A -0.5171
144 P A -0.5205
145 S A -0.6263
146 S A -1.2121
147 L A -0.8891
148 S A -1.2052
149 A A 0.0000
150 S A -0.6874
151 V A 0.4098
152 G A -0.6888
153 D A -1.5277
154 R A -2.2432
155 V A 0.0000
156 T A -0.5777
157 I A 0.0000
158 T A -0.7233
159 C A 0.0000
160 K A -2.2952
161 A A 0.0000
162 S A -1.6889
163 Q A -1.9821
164 S A -1.2315
165 V A 0.0000
166 S A -0.7269
167 N A -0.7949
168 D A -0.3049
169 V A 0.0000
170 V A 0.0000
171 W A 0.0000
172 Y A 0.0000
173 Q A 0.0000
174 Q A 0.0000
175 K A -1.7986
176 P A -1.2194
177 G A -1.7129
178 K A -2.6527
179 A A -1.6864
180 P A 0.0000
181 K A -1.4631
182 L A 0.0000
183 L A 0.0000
184 I A 0.0000
185 Y A 0.0000
186 Y A -0.2644
187 A A 0.0000
188 S A -1.0447
189 N A -1.4255
190 R A -1.2933
191 Y A -0.5565
192 T A -0.4678
193 G A -0.5119
194 V A -0.4546
195 P A -0.4236
196 S A -0.5830
197 R A -0.7386
198 F A 0.0000
199 S A -0.7288
200 G A 0.0000
201 S A -0.7816
202 G A -1.0499
203 S A -1.1740
204 G A -1.3494
205 T A -1.7638
206 D A -2.2866
207 F A 0.0000
208 T A -0.6946
209 L A 0.0000
210 T A -0.5633
211 I A 0.0000
212 S A -1.3223
213 S A -1.1417
214 L A 0.0000
215 Q A -0.6649
216 P A -0.8571
217 E A -1.2124
218 D A 0.0000
219 F A -0.6391
220 A A 0.0000
221 T A 0.0000
222 Y A 0.0000
223 F A 0.0000
224 C A 0.0000
225 Q A 0.0000
226 Q A 0.0000
227 D A -0.0430
228 Y A 0.6669
229 S A 0.1521
230 S A -0.3269
231 P A 0.0000
232 W A 0.0000
233 T A -0.2736
234 F A -0.0124
235 G A 0.0000
236 C A 0.6170
237 G A 0.0000
238 T A 0.0000
239 K A -2.0786
240 L A 0.0000
241 E A -2.1202
242 I A -0.9393
243 K A -1.6272
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Laboratory of Theory of Biopolymers 2018