| Chain sequence(s) |
A: QVQLQESGPGLVKPSETLSLTCTVSGFSLTIYGVHWVRQPPGCGLEWIGVIWSDASTDYNSALISRVTISKDTSKNQVFLKLSSVTAADTAVYYCAKEDYFGFDSWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTITCKASQSVSNDVVWYQQKPGKAPKLLIYYASNRYTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCQQDYSSPWTFGCGTKLEIK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:23)
[INFO] Main: Simulation completed successfully. (00:02:25)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4777 | |
| 2 | V | A | -1.0105 | |
| 3 | Q | A | -1.7310 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.2598 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5177 | |
| 8 | G | A | -0.3324 | |
| 9 | P | A | -0.0547 | |
| 10 | G | A | 0.3039 | |
| 11 | L | A | 0.5836 | |
| 12 | V | A | 0.0000 | |
| 13 | K | A | -1.4869 | |
| 14 | P | A | -1.1894 | |
| 15 | S | A | -1.3082 | |
| 16 | E | A | -1.9140 | |
| 17 | T | A | -1.3386 | |
| 18 | L | A | 0.0000 | |
| 19 | S | A | -0.7306 | |
| 20 | L | A | 0.0000 | |
| 21 | T | A | -0.3745 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -1.0603 | |
| 24 | V | A | 0.0000 | |
| 25 | S | A | -1.2958 | |
| 26 | G | A | -1.0740 | |
| 27 | F | A | -0.0185 | |
| 28 | S | A | 0.5514 | |
| 29 | L | A | 0.0000 | |
| 30 | T | A | 0.5536 | |
| 31 | I | A | 1.9298 | |
| 32 | Y | A | 0.9577 | |
| 33 | G | A | 0.0000 | |
| 34 | V | A | 0.0000 | |
| 35 | H | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | 0.0150 | |
| 40 | P | A | 0.0375 | |
| 41 | P | A | -0.2639 | |
| 42 | G | A | -0.2386 | |
| 43 | C | A | 0.4565 | |
| 44 | G | A | 0.0000 | |
| 45 | L | A | 0.0000 | |
| 46 | E | A | -0.3041 | |
| 47 | W | A | 0.0000 | |
| 48 | I | A | 0.0000 | |
| 49 | G | A | 0.0000 | |
| 50 | V | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | W | A | -0.1335 | |
| 53 | S | A | -0.0211 | |
| 54 | D | A | -1.3838 | |
| 55 | A | A | -0.9057 | |
| 56 | S | A | -0.7653 | |
| 57 | T | A | -0.6201 | |
| 58 | D | A | -0.5406 | |
| 59 | Y | A | 0.1940 | |
| 60 | N | A | 0.1122 | |
| 61 | S | A | 0.1053 | |
| 62 | A | A | 0.0863 | |
| 63 | L | A | 0.0000 | |
| 64 | I | A | 1.5431 | |
| 65 | S | A | 0.4793 | |
| 66 | R | A | -0.1640 | |
| 67 | V | A | 0.0000 | |
| 68 | T | A | -0.2273 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.3489 | |
| 71 | K | A | -0.8094 | |
| 72 | D | A | -1.3087 | |
| 73 | T | A | -1.2581 | |
| 74 | S | A | -1.4139 | |
| 75 | K | A | -2.3484 | |
| 76 | N | A | -1.8218 | |
| 77 | Q | A | -1.3758 | |
| 78 | V | A | 0.0000 | |
| 79 | F | A | -0.1295 | |
| 80 | L | A | 0.0000 | |
| 81 | K | A | -1.0779 | |
| 82 | L | A | 0.0000 | |
| 83 | S | A | -1.0813 | |
| 84 | S | A | -1.0795 | |
| 85 | V | A | 0.0000 | |
| 86 | T | A | -0.5550 | |
| 87 | A | A | -0.1731 | |
| 88 | A | A | 0.0071 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | 0.3159 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | 0.6424 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | 0.0000 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | K | A | 0.0000 | |
| 98 | E | A | -0.3396 | |
| 99 | D | A | -0.2526 | |
| 100 | Y | A | 1.0913 | |
| 101 | F | A | 0.6216 | |
| 102 | G | A | 0.0000 | |
| 103 | F | A | 0.0000 | |
| 104 | D | A | -0.5024 | |
| 105 | S | A | -0.8245 | |
| 106 | W | A | -0.9462 | |
| 107 | G | A | 0.0000 | |
| 108 | Q | A | -1.7571 | |
| 109 | G | A | 0.0000 | |
| 110 | T | A | 0.2653 | |
| 111 | L | A | 1.4465 | |
| 112 | V | A | 0.0000 | |
| 113 | T | A | 0.4183 | |
| 114 | V | A | 0.0000 | |
| 115 | S | A | -0.5709 | |
| 116 | S | A | -0.9238 | |
| 117 | G | A | -1.0645 | |
| 118 | G | A | -1.1235 | |
| 119 | G | A | -1.0997 | |
| 120 | G | A | -1.1336 | |
| 121 | S | A | -0.9893 | |
| 122 | G | A | -1.0852 | |
| 123 | G | A | -1.1915 | |
| 124 | G | A | -1.1793 | |
| 125 | G | A | -1.2087 | |
| 126 | S | A | -1.0300 | |
| 127 | G | A | -1.2717 | |
| 128 | G | A | -1.2035 | |
| 129 | G | A | -1.1004 | |
| 130 | G | A | -1.2099 | |
| 131 | S | A | -1.0724 | |
| 132 | G | A | -1.1686 | |
| 133 | G | A | -1.2272 | |
| 134 | G | A | -1.1779 | |
| 135 | G | A | -1.1100 | |
| 136 | S | A | -1.0600 | |
| 137 | D | A | -1.2797 | |
| 138 | I | A | -1.0064 | |
| 139 | Q | A | -1.6852 | |
| 140 | M | A | 0.0000 | |
| 141 | T | A | -0.8306 | |
| 142 | Q | A | 0.0000 | |
| 143 | S | A | -0.5171 | |
| 144 | P | A | -0.5205 | |
| 145 | S | A | -0.6263 | |
| 146 | S | A | -1.2121 | |
| 147 | L | A | -0.8891 | |
| 148 | S | A | -1.2052 | |
| 149 | A | A | 0.0000 | |
| 150 | S | A | -0.6874 | |
| 151 | V | A | 0.4098 | |
| 152 | G | A | -0.6888 | |
| 153 | D | A | -1.5277 | |
| 154 | R | A | -2.2432 | |
| 155 | V | A | 0.0000 | |
| 156 | T | A | -0.5777 | |
| 157 | I | A | 0.0000 | |
| 158 | T | A | -0.7233 | |
| 159 | C | A | 0.0000 | |
| 160 | K | A | -2.2952 | |
| 161 | A | A | 0.0000 | |
| 162 | S | A | -1.6889 | |
| 163 | Q | A | -1.9821 | |
| 164 | S | A | -1.2315 | |
| 165 | V | A | 0.0000 | |
| 166 | S | A | -0.7269 | |
| 167 | N | A | -0.7949 | |
| 168 | D | A | -0.3049 | |
| 169 | V | A | 0.0000 | |
| 170 | V | A | 0.0000 | |
| 171 | W | A | 0.0000 | |
| 172 | Y | A | 0.0000 | |
| 173 | Q | A | 0.0000 | |
| 174 | Q | A | 0.0000 | |
| 175 | K | A | -1.7986 | |
| 176 | P | A | -1.2194 | |
| 177 | G | A | -1.7129 | |
| 178 | K | A | -2.6527 | |
| 179 | A | A | -1.6864 | |
| 180 | P | A | 0.0000 | |
| 181 | K | A | -1.4631 | |
| 182 | L | A | 0.0000 | |
| 183 | L | A | 0.0000 | |
| 184 | I | A | 0.0000 | |
| 185 | Y | A | 0.0000 | |
| 186 | Y | A | -0.2644 | |
| 187 | A | A | 0.0000 | |
| 188 | S | A | -1.0447 | |
| 189 | N | A | -1.4255 | |
| 190 | R | A | -1.2933 | |
| 191 | Y | A | -0.5565 | |
| 192 | T | A | -0.4678 | |
| 193 | G | A | -0.5119 | |
| 194 | V | A | -0.4546 | |
| 195 | P | A | -0.4236 | |
| 196 | S | A | -0.5830 | |
| 197 | R | A | -0.7386 | |
| 198 | F | A | 0.0000 | |
| 199 | S | A | -0.7288 | |
| 200 | G | A | 0.0000 | |
| 201 | S | A | -0.7816 | |
| 202 | G | A | -1.0499 | |
| 203 | S | A | -1.1740 | |
| 204 | G | A | -1.3494 | |
| 205 | T | A | -1.7638 | |
| 206 | D | A | -2.2866 | |
| 207 | F | A | 0.0000 | |
| 208 | T | A | -0.6946 | |
| 209 | L | A | 0.0000 | |
| 210 | T | A | -0.5633 | |
| 211 | I | A | 0.0000 | |
| 212 | S | A | -1.3223 | |
| 213 | S | A | -1.1417 | |
| 214 | L | A | 0.0000 | |
| 215 | Q | A | -0.6649 | |
| 216 | P | A | -0.8571 | |
| 217 | E | A | -1.2124 | |
| 218 | D | A | 0.0000 | |
| 219 | F | A | -0.6391 | |
| 220 | A | A | 0.0000 | |
| 221 | T | A | 0.0000 | |
| 222 | Y | A | 0.0000 | |
| 223 | F | A | 0.0000 | |
| 224 | C | A | 0.0000 | |
| 225 | Q | A | 0.0000 | |
| 226 | Q | A | 0.0000 | |
| 227 | D | A | -0.0430 | |
| 228 | Y | A | 0.6669 | |
| 229 | S | A | 0.1521 | |
| 230 | S | A | -0.3269 | |
| 231 | P | A | 0.0000 | |
| 232 | W | A | 0.0000 | |
| 233 | T | A | -0.2736 | |
| 234 | F | A | -0.0124 | |
| 235 | G | A | 0.0000 | |
| 236 | C | A | 0.6170 | |
| 237 | G | A | 0.0000 | |
| 238 | T | A | 0.0000 | |
| 239 | K | A | -2.0786 | |
| 240 | L | A | 0.0000 | |
| 241 | E | A | -2.1202 | |
| 242 | I | A | -0.9393 | |
| 243 | K | A | -1.6272 |