Project name: pep2

Status: done

Started: 2026-02-25 03:40:19
Settings
Chain sequence(s) A: MARTKQTARKSTGGKAPRKQLATKVCPFSIFFCLRVF
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-3.7434
Maximal score value
4.7413
Average score
-0.16
Total score value
-5.9184

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.4107
2 A A -0.9024
3 R A -2.2167
4 T A -2.2340
5 K A -3.4021
6 Q A -3.3286
7 T A -2.6267
8 A A -2.6780
9 R A -3.7434
10 K A -3.6243
11 S A -2.5020
12 T A -1.8351
13 G A -1.9743
14 G A -1.9955
15 K A -2.4443
16 A A -2.0278
17 P A -2.1722
18 R A -2.8690
19 K A -2.9533
20 Q A -2.0332
21 L A -0.2339
22 A A 0.1538
23 T A -0.2139
24 K A -0.8385
25 V A 1.6510
26 C A 2.1005
27 P A 2.0989
28 F A 3.9833
29 S A 3.1727
30 I A 3.8763
31 F A 4.7413
32 F A 4.5687
33 C A 3.8827
34 L A 3.8448
35 R A 1.8788
36 V A 3.1983
37 F A 3.3690
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Laboratory of Theory of Biopolymers 2018