| Chain sequence(s) |
A: QVQLQQPGAELVRPGASVKLSCKASGYSFTSYWMNWVKQRPGQGLEWIGMIHPSDSETRLNQKFMDKATLTVDKSSSTAYMQLSSPTSEDSAVYYCARGLYGNSWGQGTLVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:16)
[INFO] Main: Simulation completed successfully. (00:01:17)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4579 | |
| 2 | V | A | -1.0485 | |
| 3 | Q | A | -1.9102 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -2.1028 | |
| 6 | Q | A | 0.0000 | |
| 7 | P | A | -1.0073 | |
| 8 | G | A | -0.8436 | |
| 9 | A | A | -0.1691 | |
| 10 | E | A | -0.7554 | |
| 11 | L | A | 0.0344 | |
| 12 | V | A | 0.0000 | |
| 13 | R | A | -1.4649 | |
| 14 | P | A | -1.1139 | |
| 15 | G | A | -1.0630 | |
| 16 | A | A | -0.7810 | |
| 17 | S | A | -1.0751 | |
| 18 | V | A | -1.2334 | |
| 19 | K | A | -1.9938 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.8736 | |
| 22 | C | A | 0.0000 | |
| 23 | K | A | -1.7554 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.2100 | |
| 26 | G | A | -1.0081 | |
| 27 | Y | A | -0.4053 | |
| 28 | S | A | -0.1398 | |
| 29 | F | A | 0.0000 | |
| 30 | T | A | -0.5708 | |
| 31 | S | A | 0.0311 | |
| 32 | Y | A | 0.8687 | |
| 33 | W | A | 0.7625 | |
| 34 | M | A | 0.0000 | |
| 35 | N | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | K | A | -0.1393 | |
| 39 | Q | A | -0.6530 | |
| 40 | R | A | -1.7382 | |
| 41 | P | A | -1.1795 | |
| 42 | G | A | -1.3946 | |
| 43 | Q | A | -1.8612 | |
| 44 | G | A | -0.8464 | |
| 45 | L | A | 0.5756 | |
| 46 | E | A | -0.1581 | |
| 47 | W | A | 0.3189 | |
| 48 | I | A | 0.0000 | |
| 49 | G | A | 0.0000 | |
| 50 | M | A | -0.3958 | |
| 51 | I | A | 0.0000 | |
| 52 | H | A | -1.0015 | |
| 53 | P | A | 0.0000 | |
| 54 | S | A | -1.4420 | |
| 55 | D | A | -2.5347 | |
| 56 | S | A | -2.1562 | |
| 57 | E | A | -2.5175 | |
| 58 | T | A | -1.8312 | |
| 59 | R | A | -2.2024 | |
| 60 | L | A | -1.2332 | |
| 61 | N | A | -1.5437 | |
| 62 | Q | A | -2.4040 | |
| 63 | K | A | -2.4886 | |
| 64 | F | A | 0.0000 | |
| 65 | M | A | -1.4004 | |
| 66 | D | A | -2.1070 | |
| 67 | K | A | -1.5414 | |
| 68 | A | A | 0.0000 | |
| 69 | T | A | -0.6850 | |
| 70 | L | A | 0.0000 | |
| 71 | T | A | -0.8457 | |
| 72 | V | A | -0.9185 | |
| 73 | D | A | -1.5412 | |
| 74 | K | A | -2.1119 | |
| 75 | S | A | -1.1632 | |
| 76 | S | A | -1.0478 | |
| 77 | S | A | -1.1731 | |
| 78 | T | A | 0.0000 | |
| 79 | A | A | 0.0000 | |
| 80 | Y | A | -0.6017 | |
| 81 | M | A | 0.0000 | |
| 82 | Q | A | -1.3916 | |
| 83 | L | A | 0.0000 | |
| 84 | S | A | -1.1723 | |
| 85 | S | A | -1.0274 | |
| 86 | P | A | 0.0000 | |
| 87 | T | A | -1.2302 | |
| 88 | S | A | -1.3663 | |
| 89 | E | A | -2.0765 | |
| 90 | D | A | 0.0000 | |
| 91 | S | A | -0.8068 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | 0.0765 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.2211 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | R | A | 0.2811 | |
| 99 | G | A | 0.0000 | |
| 100 | L | A | 1.9201 | |
| 101 | Y | A | 1.6037 | |
| 102 | G | A | 0.5026 | |
| 103 | N | A | -0.5556 | |
| 104 | S | A | -0.3975 | |
| 105 | W | A | -0.0159 | |
| 106 | G | A | 0.0000 | |
| 107 | Q | A | -1.3132 | |
| 108 | G | A | 0.0000 | |
| 109 | T | A | 0.0000 | |
| 110 | L | A | 0.2603 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.3637 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.4789 | |
| 115 | A | A | -0.4936 | |
| 116 | A | A | -0.4310 | |
| 117 | S | A | -0.4346 | |
| 118 | T | A | -0.6731 | |
| 119 | K | A | -1.1515 | |
| 120 | G | A | -1.4691 | |
| 121 | P | A | 0.0000 | |
| 122 | S | A | -0.0452 | |
| 123 | V | A | 0.0000 | |
| 124 | F | A | 1.2767 | |
| 125 | P | A | 0.0716 | |
| 126 | L | A | 0.4675 | |
| 127 | A | A | -0.7663 | |
| 128 | P | A | 0.0000 | |
| 129 | S | A | -1.2145 | |
| 130 | S | A | -1.3414 | |
| 131 | K | A | -1.9204 | |
| 132 | S | A | -1.2114 | |
| 133 | T | A | -0.9674 | |
| 134 | S | A | -0.9153 | |
| 135 | G | A | -0.7833 | |
| 136 | G | A | -0.6195 | |
| 137 | T | A | -0.4412 | |
| 138 | A | A | 0.0000 | |
| 139 | A | A | 0.1123 | |
| 140 | L | A | 0.0000 | |
| 141 | G | A | 0.0000 | |
| 142 | C | A | 0.0000 | |
| 143 | L | A | 0.7841 | |
| 144 | V | A | 0.0000 | |
| 145 | K | A | -0.2691 | |
| 146 | D | A | -0.7494 | |
| 147 | Y | A | 0.0000 | |
| 148 | F | A | 0.0000 | |
| 149 | P | A | -0.8791 | |
| 150 | E | A | -1.0677 | |
| 151 | P | A | -1.0992 | |
| 152 | V | A | -0.8425 | |
| 153 | T | A | -0.6305 | |
| 154 | V | A | -0.3590 | |
| 155 | S | A | -0.3754 | |
| 156 | W | A | 0.0000 | |
| 157 | N | A | -0.7768 | |
| 158 | S | A | -0.6757 | |
| 159 | G | A | -0.5139 | |
| 160 | A | A | -0.2292 | |
| 161 | L | A | 0.0093 | |
| 162 | T | A | -0.2583 | |
| 163 | S | A | -0.3384 | |
| 164 | G | A | -0.4050 | |
| 165 | V | A | 0.1317 | |
| 166 | H | A | -0.3033 | |
| 167 | T | A | 0.2130 | |
| 168 | F | A | 0.8616 | |
| 169 | P | A | 0.6561 | |
| 170 | A | A | 1.1693 | |
| 171 | V | A | 2.5221 | |
| 172 | L | A | 2.1236 | |
| 173 | Q | A | 0.7439 | |
| 174 | S | A | 0.1514 | |
| 175 | S | A | -0.1892 | |
| 176 | G | A | 0.2693 | |
| 177 | L | A | 0.1969 | |
| 178 | Y | A | 0.6709 | |
| 179 | S | A | 0.0000 | |
| 180 | L | A | 0.0000 | |
| 181 | S | A | 0.6523 | |
| 182 | S | A | 0.0000 | |
| 183 | V | A | 0.5126 | |
| 184 | V | A | 0.0000 | |
| 185 | T | A | -0.1737 | |
| 186 | V | A | 0.0000 | |
| 187 | P | A | -0.5866 | |
| 188 | S | A | -0.7357 | |
| 189 | S | A | -0.6559 | |
| 190 | S | A | -0.5583 | |
| 191 | L | A | -0.8259 | |
| 192 | G | A | -1.0820 | |
| 193 | T | A | -0.8967 | |
| 194 | Q | A | -1.2496 | |
| 195 | T | A | -1.1257 | |
| 196 | Y | A | 0.0000 | |
| 197 | I | A | -1.3863 | |
| 198 | C | A | 0.0000 | |
| 199 | N | A | -1.5381 | |
| 200 | V | A | 0.0000 | |
| 201 | N | A | -1.9772 | |
| 202 | H | A | 0.0000 | |
| 203 | K | A | -2.8251 | |
| 204 | P | A | -1.6979 | |
| 205 | S | A | -1.8362 | |
| 206 | N | A | -2.6077 | |
| 207 | T | A | -2.0530 | |
| 208 | K | A | -2.7321 | |
| 209 | V | A | -1.8050 | |
| 210 | D | A | -2.6464 | |
| 211 | K | A | -2.1410 | |
| 212 | K | A | -2.3358 | |
| 213 | V | A | 0.0000 | |
| 214 | E | A | -2.8669 | |
| 215 | P | A | -1.8634 | |
| 216 | K | A | -2.1604 | |
| 217 | S | A | -0.9791 | |
| 218 | C | A | 0.1301 |