| Chain sequence(s) |
A: SGHKGHK
C: SGHKGHK B: SGHKGHK E: SGHKGHK D: SGHKGHK G: SGHKGHK F: SGHKGHK H: SGHKGHK input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:41)
[INFO] Main: Simulation completed successfully. (00:03:43)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | S | A | -1.8468 | |
| 2 | G | A | -1.4421 | |
| 3 | H | A | -2.4555 | |
| 4 | K | A | -3.1269 | |
| 5 | G | A | 0.0000 | |
| 6 | H | A | -3.5103 | |
| 7 | K | A | -3.1961 | |
| 1 | S | B | -1.6045 | |
| 2 | G | B | -1.7350 | |
| 3 | H | B | -2.6642 | |
| 4 | K | B | -3.1498 | |
| 5 | G | B | -2.7381 | |
| 6 | H | B | -3.3702 | |
| 7 | K | B | -3.1575 | |
| 1 | S | C | -1.7293 | |
| 2 | G | C | -1.5170 | |
| 3 | H | C | -2.5272 | |
| 4 | K | C | -2.7789 | |
| 5 | G | C | 0.0000 | |
| 6 | H | C | -3.3818 | |
| 7 | K | C | -3.7737 | |
| 1 | S | D | -2.0901 | |
| 2 | G | D | -1.1995 | |
| 3 | H | D | 0.0000 | |
| 4 | K | D | -2.4228 | |
| 5 | G | D | 0.0000 | |
| 6 | H | D | -3.1580 | |
| 7 | K | D | -3.8092 | |
| 1 | S | E | -2.0784 | |
| 2 | G | E | -1.7700 | |
| 3 | H | E | 0.0000 | |
| 4 | K | E | -3.0657 | |
| 5 | G | E | 0.0000 | |
| 6 | H | E | -3.4551 | |
| 7 | K | E | -3.7995 | |
| 1 | S | F | -1.5595 | |
| 2 | G | F | -1.9405 | |
| 3 | H | F | -3.0703 | |
| 4 | K | F | -3.5550 | |
| 5 | G | F | -3.3621 | |
| 6 | H | F | -3.1967 | |
| 7 | K | F | -3.2864 | |
| 1 | S | G | -1.9420 | |
| 2 | G | G | -1.4797 | |
| 3 | H | G | -2.6468 | |
| 4 | K | G | -3.1424 | |
| 5 | G | G | -3.5401 | |
| 6 | H | G | -3.2945 | |
| 7 | K | G | -3.3442 | |
| 1 | S | H | -2.0344 | |
| 2 | G | H | -1.6332 | |
| 3 | H | H | 0.0000 | |
| 4 | K | H | -3.1500 | |
| 5 | G | H | -3.5665 | |
| 6 | H | H | -3.6943 | |
| 7 | K | H | -3.8006 |