Project name: query_structure

Status: done

Started: 2026-03-16 23:02:24
Settings
Chain sequence(s) A: VAERCCKNGKRGCGRWCRDHSRCC
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:29)
Show buried residues

Minimal score value
-3.6089
Maximal score value
0.8032
Average score
-2.1313
Total score value
-51.151

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 0.8032
2 A A -1.5503
3 E A -2.8112
4 R A -3.2915
5 C A 0.0000
6 C A -1.7754
7 K A -3.2452
8 N A -3.1216
9 G A -2.3759
10 K A -2.7380
11 R A -3.2957
12 G A -2.9050
13 C A -1.5307
14 G A -2.3268
15 R A -2.9061
16 W A -2.2194
17 C A 0.0000
18 R A -3.5004
19 D A -3.6089
20 H A -2.6966
21 S A -2.5681
22 R A -2.3080
23 C A -0.6686
24 C A -0.5108
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Laboratory of Theory of Biopolymers 2018