| Chain sequence(s) |
A: VAERCCKNGKRGCGRWCRDHSRCC
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:29)
[INFO] Main: Simulation completed successfully. (00:00:29)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | V | A | 0.8032 | |
| 2 | A | A | -1.5503 | |
| 3 | E | A | -2.8112 | |
| 4 | R | A | -3.2915 | |
| 5 | C | A | 0.0000 | |
| 6 | C | A | -1.7754 | |
| 7 | K | A | -3.2452 | |
| 8 | N | A | -3.1216 | |
| 9 | G | A | -2.3759 | |
| 10 | K | A | -2.7380 | |
| 11 | R | A | -3.2957 | |
| 12 | G | A | -2.9050 | |
| 13 | C | A | -1.5307 | |
| 14 | G | A | -2.3268 | |
| 15 | R | A | -2.9061 | |
| 16 | W | A | -2.2194 | |
| 17 | C | A | 0.0000 | |
| 18 | R | A | -3.5004 | |
| 19 | D | A | -3.6089 | |
| 20 | H | A | -2.6966 | |
| 21 | S | A | -2.5681 | |
| 22 | R | A | -2.3080 | |
| 23 | C | A | -0.6686 | |
| 24 | C | A | -0.5108 |