Project name: query_structure

Status: done

Started: 2026-03-17 01:12:43
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGTWVRPNQSKPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:40)
Show buried residues

Minimal score value
-3.481
Maximal score value
1.605
Average score
-0.8058
Total score value
-75.747

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6050
2 S A 0.0152
3 D A -0.9644
4 V A -1.1730
5 P A 0.0000
6 R A -3.3504
7 D A -3.4810
8 L A -2.2046
9 E A -2.0687
10 V A 0.1245
11 V A 1.5580
12 A A 0.8995
13 A A 0.2995
14 T A -0.5408
15 P A -1.1539
16 T A -1.0095
17 S A -0.5333
18 L A 0.0000
19 L A 0.7603
20 I A 0.0000
21 S A -1.1067
22 W A 0.0000
23 D A -3.2906
24 A A -1.7045
25 P A 0.0000
26 A A 0.0996
27 V A 0.3053
28 T A -0.3877
29 V A -1.2225
30 R A -1.9938
31 Y A -1.2297
32 Y A 0.0000
33 R A -0.9045
34 I A 0.0000
35 T A -0.5054
36 Y A -0.2726
37 G A 0.0000
38 E A -1.4681
39 T A -1.2008
40 G A -1.2160
41 G A -1.3406
42 N A -1.5256
43 S A -0.8286
44 P A -0.3001
45 V A 0.4768
46 Q A -0.7814
47 E A -1.6046
48 F A -0.6456
49 T A -0.2967
50 V A 0.0000
51 P A -1.2196
52 G A -1.4466
53 S A -1.4117
54 K A -2.2533
55 S A -1.4234
56 T A -0.7679
57 A A 0.0000
58 T A 0.2448
59 I A 0.0000
60 S A -0.6579
61 G A -1.0329
62 L A 0.0000
63 K A -2.3598
64 P A -1.6629
65 G A -1.4305
66 V A -1.3996
67 D A -2.0333
68 Y A 0.0000
69 T A -0.7160
70 I A 0.0000
71 T A -0.4013
72 V A 0.0000
73 Y A -0.7651
74 A A 0.0000
75 V A 0.0000
76 T A -1.6032
77 G A -1.1914
78 T A -0.1750
79 W A 0.9888
80 V A 1.2196
81 R A -1.3010
82 P A -1.6712
83 N A -2.6561
84 Q A -2.5709
85 S A 0.0000
86 K A -2.2188
87 P A -1.3118
88 I A 0.0000
89 S A -0.6348
90 I A -0.5842
91 N A -1.7063
92 Y A -1.4311
93 R A -2.4988
94 T A -1.5018
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Laboratory of Theory of Biopolymers 2018