Chain sequence(s) |
A: NFGAILS
C: NFGAILS B: NFGAILS E: NFGAILS D: NFGAILS G: NFGAILS F: NFGAILS H: NFGAILS input PDB |
Selected Chain(s) | A,C,B,E,D,G,F,H |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:01) [INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01) [INFO] runJob: Creating pdb object from: input.pdb (00:00:01) [INFO] FoldX: Starting FoldX energy minimalization (00:00:01) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:14) [INFO] Main: Simulation completed successfully. (00:00:17) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | N | A | -0.6657 | |
2 | F | A | 0.8687 | |
3 | G | A | 0.0000 | |
4 | A | A | 2.1883 | |
5 | I | A | 2.1468 | |
6 | L | A | 0.0000 | |
7 | S | A | -0.3187 | |
1 | N | B | -0.5246 | |
2 | F | B | 1.1553 | |
3 | G | B | 0.0000 | |
4 | A | B | 0.0000 | |
5 | I | B | 1.0364 | |
6 | L | B | 1.1031 | |
7 | S | B | 0.0284 | |
1 | N | C | -0.4611 | |
2 | F | C | 1.2602 | |
3 | G | C | 1.1241 | |
4 | A | C | 1.7542 | |
5 | I | C | 2.5958 | |
6 | L | C | 1.6395 | |
7 | S | C | 0.2310 | |
1 | N | D | -0.1457 | |
2 | F | D | 1.4750 | |
3 | G | D | 0.7654 | |
4 | A | D | 1.1729 | |
5 | I | D | 1.4333 | |
6 | L | D | 1.6965 | |
7 | S | D | 0.3649 | |
1 | N | E | -0.7294 | |
2 | F | E | 0.7649 | |
3 | G | E | 1.4940 | |
4 | A | E | 2.2604 | |
5 | I | E | 2.2199 | |
6 | L | E | 0.6021 | |
7 | S | E | -0.5103 | |
1 | N | F | -0.3049 | |
2 | F | F | 1.2848 | |
3 | G | F | 1.2186 | |
4 | A | F | 0.0000 | |
5 | I | F | 1.1540 | |
6 | L | F | 1.1501 | |
7 | S | F | 0.0269 | |
1 | N | G | -0.9108 | |
2 | F | G | 0.4577 | |
3 | G | G | 0.7625 | |
4 | A | G | 1.8021 | |
5 | I | G | 2.5242 | |
6 | L | G | 1.2911 | |
7 | S | G | 0.1497 | |
1 | N | H | -0.2810 | |
2 | F | H | 1.6230 | |
3 | G | H | 1.1468 | |
4 | A | H | 1.4796 | |
5 | I | H | 1.8525 | |
6 | L | H | 1.8922 | |
7 | S | H | 0.5239 |