| Chain sequence(s) |
A: QVQLQESGGGLVQAGGSLRLSSAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYSAAHSWVTDYYPFEHYYWGQGTQVTVSSLE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:51)
[INFO] Main: Simulation completed successfully. (00:01:52)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2558 | |
| 2 | V | A | -0.4438 | |
| 3 | Q | A | -1.6430 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.7293 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.0920 | |
| 8 | G | A | -0.9862 | |
| 9 | G | A | -0.8023 | |
| 10 | G | A | -0.0558 | |
| 11 | L | A | 1.0659 | |
| 12 | V | A | 0.2454 | |
| 13 | Q | A | -1.1835 | |
| 14 | A | A | -1.3393 | |
| 15 | G | A | -1.2498 | |
| 16 | G | A | -0.8176 | |
| 17 | S | A | -1.2309 | |
| 18 | L | A | -1.0805 | |
| 19 | R | A | -2.2394 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.8989 | |
| 22 | S | A | 0.0000 | |
| 23 | A | A | -1.1301 | |
| 24 | A | A | -0.6339 | |
| 25 | S | A | -0.6712 | |
| 26 | G | A | 0.1458 | |
| 27 | Y | A | 0.5957 | |
| 28 | I | A | 0.0000 | |
| 29 | S | A | -1.2742 | |
| 30 | D | A | -1.5268 | |
| 31 | A | A | 0.0000 | |
| 32 | Y | A | 0.0012 | |
| 33 | Y | A | 0.2093 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | 0.1223 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.7394 | |
| 40 | A | A | -1.7684 | |
| 41 | P | A | -1.2368 | |
| 42 | G | A | -1.6681 | |
| 43 | K | A | -2.6679 | |
| 44 | E | A | -3.0564 | |
| 45 | R | A | -2.2203 | |
| 46 | E | A | -1.0145 | |
| 47 | F | A | 0.3256 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.4400 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | 0.0000 | |
| 53 | H | A | -1.7726 | |
| 54 | G | A | -1.1944 | |
| 55 | T | A | -1.1123 | |
| 56 | N | A | -1.3138 | |
| 57 | T | A | -0.0839 | |
| 58 | Y | A | 0.8291 | |
| 59 | Y | A | 0.0080 | |
| 60 | A | A | -0.8059 | |
| 61 | D | A | -2.2028 | |
| 62 | S | A | -1.7232 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.4240 | |
| 65 | G | A | -1.7451 | |
| 66 | R | A | -1.4615 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.7887 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.6319 | |
| 71 | R | A | -1.1260 | |
| 72 | D | A | -1.6748 | |
| 73 | N | A | -2.0984 | |
| 74 | A | A | -1.3183 | |
| 75 | K | A | -2.0773 | |
| 76 | N | A | -1.4922 | |
| 77 | T | A | 0.0000 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.6423 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.5452 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.3373 | |
| 84 | S | A | -1.0864 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.0463 | |
| 87 | P | A | -1.5657 | |
| 88 | E | A | -2.2176 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.8703 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | -0.6135 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.3591 | |
| 95 | S | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | H | A | 0.2915 | |
| 99 | S | A | 0.2184 | |
| 100 | W | A | 0.6206 | |
| 101 | V | A | 0.5330 | |
| 102 | T | A | 0.3674 | |
| 103 | D | A | -0.3815 | |
| 104 | Y | A | 1.3312 | |
| 105 | Y | A | 1.8517 | |
| 106 | P | A | 0.9754 | |
| 107 | F | A | 1.4425 | |
| 108 | E | A | -0.4359 | |
| 109 | H | A | 0.1483 | |
| 110 | Y | A | 1.1833 | |
| 111 | Y | A | 0.4262 | |
| 112 | W | A | 0.4019 | |
| 113 | G | A | -0.6689 | |
| 114 | Q | A | -1.4569 | |
| 115 | G | A | -0.9930 | |
| 116 | T | A | 0.0000 | |
| 117 | Q | A | -1.0676 | |
| 118 | V | A | 0.0000 | |
| 119 | T | A | -0.2448 | |
| 120 | V | A | 0.0000 | |
| 121 | S | A | -0.4052 | |
| 122 | S | A | -0.4166 | |
| 123 | L | A | 0.3144 | |
| 124 | E | A | -1.3858 |