Project name: RP18-TPA

Status: done

Started: 2026-04-16 08:38:33
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Chain sequence(s) A: MDAMKRGLCCVLLLCGAVFVSPSQEIHARRLARRGGVKRISALIYEETRGVLKVDVFLKDLEPPIVVRFVRLIPVTDHSNAVMLSENRSLFFLRDIVEFRCHPGMTEYKLVVVGADGVGKSALTIQLITPSSYIETLPKAIKRRINALKQLQVSLFGSSRVQYVVNPAVKIVFLNIDPSDFPNWHTAYYFKQYFHFRDDLEVQYPYDVPDYA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:30)
Show buried residues

Minimal score value
-3.6605
Maximal score value
3.6642
Average score
-0.5514
Total score value
-116.9064

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.1897
2 D A -1.0058
3 A A -0.4980
4 M A -0.5582
5 K A -2.3023
6 R A -2.4859
7 G A -0.7846
8 L A 1.6310
9 C A 2.0955
10 C A 2.7375
11 V A 3.5558
12 L A 3.6642
13 L A 3.6056
14 L A 2.8853
15 C A 1.5639
16 G A 0.8852
17 A A 1.8074
18 V A 3.0953
19 F A 3.5504
20 V A 3.0498
21 S A 1.1685
22 P A -0.2468
23 S A -1.0219
24 Q A -1.8462
25 E A -1.5123
26 I A 0.3700
27 H A -1.3581
28 A A -1.3236
29 R A -2.3293
30 R A -2.6490
31 L A -0.6924
32 A A -1.5443
33 R A -2.8502
34 R A -2.8177
35 G A -2.1681
36 G A -1.8493
37 V A -1.6537
38 K A -3.2126
39 R A -2.9775
40 I A -1.0865
41 S A -0.9521
42 A A 0.2306
43 L A 1.1385
44 I A 0.9099
45 Y A -0.6333
46 E A -2.7695
47 E A -3.2150
48 T A -2.5337
49 R A -2.7971
50 G A -2.4837
51 V A 0.0000
52 L A 0.0000
53 K A -1.2009
54 V A 0.0000
55 D A 0.1582
56 V A 0.6232
57 F A 0.4678
58 L A -0.6545
59 K A -2.1757
60 D A -3.2856
61 L A -2.3772
62 E A -3.0997
63 P A -1.4682
64 P A -0.8205
65 I A 0.2950
66 V A 1.7213
67 V A 0.0000
68 R A -0.8520
69 F A 0.2426
70 V A 0.0000
71 R A -0.3768
72 L A 0.0000
73 I A 0.0580
74 P A 0.0000
75 V A -0.0429
76 T A -0.6477
77 D A -1.1791
78 H A -1.2427
79 S A -0.9676
80 N A -1.4344
81 A A -0.5411
82 V A 0.5939
83 M A -0.1669
84 L A 0.0197
85 S A -1.0736
86 E A -2.8662
87 N A -2.6531
88 R A -2.9451
89 S A -1.3402
90 L A -0.2475
91 F A 0.0000
92 F A 0.1485
93 L A -0.0673
94 R A -1.4380
95 D A -0.6239
96 I A 0.8239
97 V A 0.0000
98 E A -0.5011
99 F A 0.0000
100 R A -1.5550
101 C A -1.3528
102 H A -1.5354
103 P A -1.3805
104 G A -0.9597
105 M A -0.6682
106 T A -0.0838
107 E A -0.8388
108 Y A 0.0000
109 K A -0.6589
110 L A 0.0000
111 V A -0.2419
112 V A 0.0000
113 V A -0.4485
114 G A -0.5182
115 A A -0.7740
116 D A -1.8325
117 G A -0.6015
118 V A 0.2079
119 G A -0.7193
120 K A -1.4983
121 S A -0.6243
122 A A -0.2465
123 L A 0.4697
124 T A -0.1573
125 I A -0.2079
126 Q A -0.6731
127 L A 0.7930
128 I A 1.6393
129 T A 0.9488
130 P A 0.6115
131 S A 0.1654
132 S A -0.0296
133 Y A 0.9814
134 I A 0.4709
135 E A -1.3176
136 T A -0.4480
137 L A 0.0536
138 P A -1.0201
139 K A -2.3986
140 A A -1.4037
141 I A -0.7373
142 K A -1.9366
143 R A -3.1935
144 R A -2.6171
145 I A -1.0517
146 N A -2.4147
147 A A -1.7270
148 L A -0.6346
149 K A -2.1339
150 Q A -1.2683
151 L A 0.1615
152 Q A -0.1555
153 V A 1.3248
154 S A 0.6910
155 L A 1.0309
156 F A 2.0632
157 G A 0.3936
158 S A -0.2350
159 S A -0.6501
160 R A -1.0733
161 V A 1.0511
162 Q A 0.4914
163 Y A 2.0766
164 V A 2.6793
165 V A 1.7498
166 N A -0.1739
167 P A -0.1917
168 A A -0.3425
169 V A -0.1873
170 K A -1.1999
171 I A 0.3210
172 V A 0.3088
173 F A 0.8104
174 L A 0.5973
175 N A -0.8111
176 I A -1.3888
177 D A -2.6575
178 P A -2.0227
179 S A -1.8972
180 D A -2.6180
181 F A 0.0000
182 P A -1.2844
183 N A -1.2991
184 W A -0.5860
185 H A -0.6947
186 T A -0.5416
187 A A 0.0000
188 Y A -0.3184
189 Y A 0.6241
190 F A 0.2758
191 K A -0.8967
192 Q A -0.8113
193 Y A 0.6903
194 F A -0.2178
195 H A -1.5390
196 F A -1.4672
197 R A -3.2343
198 D A -3.6605
199 D A -3.2492
200 L A -1.9881
201 E A -2.5463
202 V A -1.4451
203 Q A -1.7667
204 Y A 0.0000
205 P A -0.7477
206 Y A -0.7977
207 D A -1.8435
208 V A -1.2302
209 P A -0.9199
210 D A -1.5310
211 Y A 0.5041
212 A A 0.1987
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Laboratory of Theory of Biopolymers 2018