Project name: aes72_af3

Status: done

Started: 2026-04-09 04:46:36
Settings
Chain sequence(s) A: MASPQSEAIRQMLREQKEAAKKGAPSIEEQRRQLDYLGGFSPLESDVTVEKTRIAGVPGEWISTPDARKDRVLFYLHGGAYCFGSCDSHRGLVSRLARACGSRALLIEYRLAPEHPFPAALEDSTAAYRELIRSGVRPENLVIAGDSAGGGLTMATLLTLRDEGDPLPSAAVLLSPWTDLEGTGESMKTKADVEPWLDPEKSHLLAKLYLGDLDPRHPLVSPIHADLNNLPPLLVHVGSDECLLDDSVRLVERAKSAGVETEFKIWDEMWHVFHGFPIPEAQQAIEEIGAFVRARLP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:41)
Show buried residues

Minimal score value
-3.8392
Maximal score value
0.3615
Average score
-0.9019
Total score value
-267.8608

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.2447
2 A A -0.7698
3 S A -0.7338
4 P A -1.0630
5 Q A -1.4784
6 S A 0.0000
7 E A -2.4201
8 A A -1.4687
9 I A 0.0000
10 R A -1.8583
11 Q A -2.5104
12 M A -1.8210
13 L A 0.0000
14 R A -2.8969
15 E A -3.4124
16 Q A -2.7114
17 K A -2.8569
18 E A -3.8392
19 A A -2.8659
20 A A -2.6304
21 K A -3.4095
22 K A -3.1027
23 G A -1.9966
24 A A -1.2379
25 P A -1.4946
26 S A -1.4323
27 I A -1.5378
28 E A -2.9980
29 E A -3.4821
30 Q A -2.2408
31 R A -2.4125
32 R A -3.2221
33 Q A -1.7113
34 L A -1.2920
35 D A -1.6137
36 Y A 0.0770
37 L A -0.0127
38 G A -0.6199
39 G A -0.2393
40 F A 0.3615
41 S A 0.0000
42 P A -0.2201
43 L A 0.0161
44 E A -0.8067
45 S A -0.8905
46 D A -1.2854
47 V A -0.4927
48 T A -0.4586
49 V A -0.7029
50 E A -2.3083
51 K A -2.7904
52 T A -2.1792
53 R A -2.4347
54 I A 0.0000
55 A A -0.8250
56 G A -1.0669
57 V A 0.0000
58 P A -1.6110
59 G A 0.0000
60 E A 0.0000
61 W A -1.0146
62 I A 0.0000
63 S A -1.1738
64 T A 0.0000
65 P A -1.5989
66 D A -2.5124
67 A A -2.1989
68 R A -2.6486
69 K A -2.8322
70 D A -2.0922
71 R A -1.9566
72 V A 0.0000
73 L A 0.0000
74 F A 0.0000
75 Y A 0.0000
76 L A 0.0000
77 H A 0.0000
78 G A 0.0000
79 G A 0.0000
80 A A 0.0397
81 Y A 0.0000
82 C A 0.0000
83 F A 0.0000
84 G A 0.0000
85 S A -1.2659
86 C A 0.0000
87 D A -2.2102
88 S A 0.0000
89 H A 0.0000
90 R A -0.7961
91 G A 0.0000
92 L A 0.0000
93 V A 0.0000
94 S A 0.0000
95 R A -0.8146
96 L A 0.0000
97 A A 0.0000
98 R A -1.3565
99 A A -1.3024
100 C A 0.0000
101 G A -1.5840
102 S A 0.0000
103 R A -1.4582
104 A A 0.0000
105 L A 0.0000
106 L A 0.0000
107 I A 0.0000
108 E A -1.3489
109 Y A 0.0000
110 R A -1.5883
111 L A -0.9287
112 A A 0.0000
113 P A -1.3456
114 E A -2.2287
115 H A -1.6759
116 P A -1.2189
117 F A -0.4152
118 P A -0.6149
119 A A 0.0000
120 A A 0.0000
121 L A 0.0000
122 E A -1.8722
123 D A 0.0000
124 S A 0.0000
125 T A 0.0000
126 A A -0.8708
127 A A 0.0000
128 Y A 0.0000
129 R A -1.3477
130 E A -1.3917
131 L A 0.0000
132 I A -1.2978
133 R A -2.3139
134 S A -1.4802
135 G A -1.3532
136 V A 0.0000
137 R A -1.7009
138 P A -1.2424
139 E A -2.1782
140 N A 0.0000
141 L A 0.0000
142 V A 0.0000
143 I A 0.0000
144 A A 0.0000
145 G A 0.0000
146 D A 0.0000
147 S A 0.0000
148 A A 0.0000
149 G A 0.0000
150 G A 0.0000
151 G A 0.0000
152 L A 0.0000
153 T A 0.0000
154 M A 0.0000
155 A A 0.0000
156 T A 0.0000
157 L A 0.0000
158 L A 0.0000
159 T A 0.0000
160 L A 0.0000
161 R A -2.2791
162 D A -3.1506
163 E A -3.1215
164 G A -2.1749
165 D A -1.6008
166 P A -0.9360
167 L A -0.4963
168 P A 0.0000
169 S A -0.8931
170 A A 0.0000
171 A A 0.0000
172 V A 0.0000
173 L A 0.0000
174 L A 0.0000
175 S A 0.0000
176 P A 0.0000
177 W A 0.0000
178 T A 0.0000
179 D A 0.0000
180 L A 0.0000
181 E A -1.8631
182 G A -1.4909
183 T A -1.0646
184 G A 0.0000
185 E A -2.4802
186 S A 0.0000
187 M A 0.0000
188 K A -2.7133
189 T A -1.8220
190 K A -1.6004
191 A A -1.6749
192 D A -2.0438
193 V A -0.7686
194 E A 0.0000
195 P A 0.0000
196 W A -0.8831
197 L A -0.5069
198 D A -1.6892
199 P A -1.5861
200 E A -2.2374
201 K A -1.5990
202 S A -1.3123
203 H A -1.4466
204 L A -0.6588
205 L A 0.0000
206 A A 0.0000
207 K A -1.9846
208 L A -0.9164
209 Y A 0.0000
210 L A 0.0000
211 G A -1.8134
212 D A -2.3217
213 L A -1.7585
214 D A -2.4989
215 P A -2.3921
216 R A -2.6616
217 H A -1.6429
218 P A -1.2120
219 L A -0.1652
220 V A 0.0000
221 S A 0.0000
222 P A 0.0000
223 I A 0.0000
224 H A -1.5828
225 A A 0.0000
226 D A -2.4332
227 L A 0.0000
228 N A -2.3326
229 N A -2.3147
230 L A 0.0000
231 P A 0.0000
232 P A -1.1285
233 L A 0.0000
234 L A 0.0000
235 V A 0.0000
236 H A 0.0000
237 V A 0.0000
238 G A 0.0000
239 S A -0.9020
240 D A -0.9380
241 E A 0.0000
242 C A 0.0000
243 L A 0.0000
244 L A -0.0948
245 D A -0.5372
246 D A 0.0000
247 S A 0.0000
248 V A -0.1252
249 R A -1.1156
250 L A 0.0000
251 V A 0.0000
252 E A -2.8037
253 R A -2.9737
254 A A 0.0000
255 K A -3.3534
256 S A -2.2448
257 A A -2.3588
258 G A -2.0307
259 V A 0.0000
260 E A -2.5356
261 T A -1.8938
262 E A -1.5289
263 F A -0.2582
264 K A -0.5082
265 I A -0.0293
266 W A -0.9047
267 D A -2.0262
268 E A -1.8219
269 M A 0.0000
270 W A 0.0000
271 H A 0.0000
272 V A 0.0000
273 F A 0.0000
274 H A 0.0000
275 G A -0.2353
276 F A 0.0000
277 P A -0.4744
278 I A 0.0000
279 P A -1.1608
280 E A -1.6394
281 A A 0.0000
282 Q A -2.2960
283 Q A -2.6369
284 A A 0.0000
285 I A 0.0000
286 E A -2.9915
287 E A -2.2981
288 I A 0.0000
289 G A 0.0000
290 A A -1.2699
291 F A 0.0000
292 V A 0.0000
293 R A -1.6504
294 A A -0.8290
295 R A -1.1501
296 L A 0.0000
297 P A -1.0357
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018