Project name: GHKGHKS20

Status: done

Started: 2026-05-21 12:19:46
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Chain sequence(s) A: GHKGHKS
C: GHKGHKS
B: GHKGHKS
E: GHKGHKS
D: GHKGHKS
G: GHKGHKS
F: GHKGHKS
I: GHKGHKS
H: GHKGHKS
K: GHKGHKS
J: GHKGHKS
M: GHKGHKS
L: GHKGHKS
O: GHKGHKS
N: GHKGHKS
Q: GHKGHKS
P: GHKGHKS
S: GHKGHKS
R: GHKGHKS
T: GHKGHKS
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:35)
Show buried residues

Minimal score value
-4.0125
Maximal score value
0.0
Average score
-2.5575
Total score value
-358.0487

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.4637
2 H A -3.5522
3 K A -3.2493
4 G A 0.0000
5 H A -3.0789
6 K A -3.1366
7 S A -1.7706
1 G B -2.7364
2 H B -3.2698
3 K B -3.3576
4 G B -2.9632
5 H B -2.7348
6 K B -2.9392
7 S B -1.3370
1 G C -2.1195
2 H C -3.1539
3 K C -3.3761
4 G C -2.7462
5 H C -3.4015
6 K C -3.2043
7 S C -1.9750
1 G D -2.3595
2 H D -2.7498
3 K D -3.4617
4 G D -2.8796
5 H D -2.8360
6 K D -2.7424
7 S D -1.4282
1 G E -2.1917
2 H E -2.9121
3 K E -3.6545
4 G E -3.2414
5 H E -2.6097
6 K E -3.1069
7 S E -1.5832
1 G F -2.3091
2 H F -2.8959
3 K F -3.0218
4 G F -2.6968
5 H F -2.3965
6 K F -2.7461
7 S F -1.3993
1 G G -1.5668
2 H G -2.3188
3 K G -2.9443
4 G G -2.5307
5 H G -2.5972
6 K G -2.6370
7 S G -1.2843
1 G H -1.5929
2 H H -2.2927
3 K H -3.1760
4 G H -2.3630
5 H H -2.4403
6 K H -2.5608
7 S H -1.1507
1 G I -1.9542
2 H I -2.7298
3 K I -2.9941
4 G I -2.5709
5 H I -2.5556
6 K I -2.5687
7 S I -1.3523
1 G J -1.9555
2 H J -2.5782
3 K J -2.8135
4 G J -2.2944
5 H J -2.3800
6 K J -2.6764
7 S J -1.7886
1 G K -2.4737
2 H K -3.0694
3 K K -4.0125
4 G K -3.1693
5 H K -2.9006
6 K K -2.9423
7 S K -1.4744
1 G L -1.7806
2 H L -2.5005
3 K L -3.8406
4 G L -2.9025
5 H L -2.5072
6 K L -2.4987
7 S L -1.0606
1 G M -2.0832
2 H M -3.2159
3 K M -3.5595
4 G M -2.8007
5 H M -2.5972
6 K M -2.6090
7 S M -1.2947
1 G N -2.8557
2 H N -3.7984
3 K N -3.7883
4 G N -3.8336
5 H N -3.4348
6 K N -3.0408
7 S N -1.7522
1 G O -1.9288
2 H O -2.4368
3 K O -2.9347
4 G O -2.4828
5 H O -2.5769
6 K O -2.5905
7 S O -1.3270
1 G P -2.7051
2 H P -3.7099
3 K P -3.5111
4 G P -2.5580
5 H P -3.1172
6 K P -2.7568
7 S P -1.2775
1 G Q -2.1961
2 H Q -2.6782
3 K Q -2.8172
4 G Q -2.3360
5 H Q -2.5495
6 K Q -2.4136
7 S Q -1.1973
1 G R -2.7022
2 H R -2.4865
3 K R -2.6563
4 G R -2.4342
5 H R -2.6811
6 K R -2.9590
7 S R -1.5827
1 G S -2.2998
2 H S -2.6363
3 K S -2.9783
4 G S -2.4034
5 H S -2.4335
6 K S -2.5801
7 S S -1.2402
1 G T -1.8767
2 H T -2.3805
3 K T -3.0121
4 G T -2.6857
5 H T -2.9377
6 K T -2.9728
7 S T -1.7560
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Laboratory of Theory of Biopolymers 2018