| Chain sequence(s) |
A: EIKKMLEKAIKKVKEMLEKMIKEIKCMLENGEDSEKILKKAKEMAEKILKMVIELAEKILCKAGNEEIKKMLEKAIKKVKEMLEKMIKEIKCMLENGEDSEKILKKAKEMAEKILKMVIELAEKILCK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:14:01)
[INFO] Main: Simulation completed successfully. (00:14:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | A | -1.7660 | |
| 2 | I | A | -0.3408 | |
| 3 | K | A | -1.9377 | |
| 4 | K | A | -1.9731 | |
| 5 | M | A | -0.1270 | |
| 6 | L | A | 0.0000 | |
| 7 | E | A | -1.2857 | |
| 8 | K | A | -1.2889 | |
| 9 | A | A | -0.1484 | |
| 10 | I | A | -0.0422 | |
| 11 | K | A | -1.5873 | |
| 12 | K | A | -1.0532 | |
| 13 | V | A | 0.0000 | |
| 14 | K | A | -1.3840 | |
| 15 | E | A | -1.9868 | |
| 16 | M | A | -0.3168 | |
| 17 | L | A | 0.0000 | |
| 18 | E | A | -1.6663 | |
| 19 | K | A | -1.4109 | |
| 20 | M | A | 0.0000 | |
| 21 | I | A | 0.0000 | |
| 22 | K | A | -1.7527 | |
| 23 | E | A | -0.8032 | |
| 24 | I | A | 0.0000 | |
| 25 | K | A | -0.8092 | |
| 26 | C | A | 0.4978 | |
| 27 | M | A | 0.0000 | |
| 28 | L | A | -0.1182 | |
| 29 | E | A | -2.0226 | |
| 30 | N | A | -1.6993 | |
| 31 | G | A | -0.8443 | |
| 32 | E | A | -1.2011 | |
| 33 | D | A | -1.9482 | |
| 34 | S | A | -0.7355 | |
| 35 | E | A | -2.0722 | |
| 36 | K | A | -1.6353 | |
| 37 | I | A | 0.0000 | |
| 38 | L | A | 0.0000 | |
| 39 | K | A | -1.5869 | |
| 40 | K | A | -0.8608 | |
| 41 | A | A | 0.0000 | |
| 42 | K | A | -1.4416 | |
| 43 | E | A | -1.5485 | |
| 44 | M | A | 0.0000 | |
| 45 | A | A | 0.0000 | |
| 46 | E | A | -2.0198 | |
| 47 | K | A | -1.4172 | |
| 48 | I | A | 0.0000 | |
| 49 | L | A | -0.1075 | |
| 50 | K | A | -1.6319 | |
| 51 | M | A | -0.1264 | |
| 52 | V | A | 0.3754 | |
| 53 | I | A | 0.5428 | |
| 54 | E | A | -1.6303 | |
| 55 | L | A | -0.1520 | |
| 56 | A | A | 0.0000 | |
| 57 | E | A | -2.0371 | |
| 58 | K | A | -1.6417 | |
| 59 | I | A | 0.0000 | |
| 60 | L | A | 0.1887 | |
| 61 | C | A | 0.4715 | |
| 62 | K | A | -1.5666 | |
| 63 | A | A | -0.3762 | |
| 64 | G | A | -0.5473 | |
| 65 | N | A | -0.8810 | |
| 66 | E | A | -2.1761 | |
| 67 | E | A | -1.3030 | |
| 68 | I | A | 0.0000 | |
| 69 | K | A | -1.3996 | |
| 70 | K | A | -1.8360 | |
| 71 | M | A | -0.1769 | |
| 72 | L | A | 0.0000 | |
| 73 | E | A | -1.7420 | |
| 74 | K | A | -1.5641 | |
| 75 | A | A | -0.1762 | |
| 76 | I | A | 0.0612 | |
| 77 | K | A | -1.2578 | |
| 78 | K | A | -0.9685 | |
| 79 | V | A | 0.0000 | |
| 80 | K | A | -1.6681 | |
| 81 | E | A | -2.0374 | |
| 82 | M | A | -0.3107 | |
| 83 | L | A | 0.0000 | |
| 84 | E | A | -2.0525 | |
| 85 | K | A | -1.5632 | |
| 86 | M | A | 0.0000 | |
| 87 | I | A | -0.0803 | |
| 88 | K | A | -1.6622 | |
| 89 | E | A | -0.7326 | |
| 90 | I | A | 0.0000 | |
| 91 | K | A | -0.9542 | |
| 92 | C | A | 0.3791 | |
| 93 | M | A | 0.0000 | |
| 94 | L | A | -0.1517 | |
| 95 | E | A | -2.0241 | |
| 96 | N | A | -1.6940 | |
| 97 | G | A | -0.8970 | |
| 98 | E | A | -1.4995 | |
| 99 | D | A | -2.0057 | |
| 100 | S | A | -0.7423 | |
| 101 | E | A | -2.0110 | |
| 102 | K | A | -1.2812 | |
| 103 | I | A | 0.0000 | |
| 104 | L | A | -0.1648 | |
| 105 | K | A | -1.7719 | |
| 106 | K | A | -0.8507 | |
| 107 | A | A | 0.0000 | |
| 108 | K | A | -1.4997 | |
| 109 | E | A | -1.6054 | |
| 110 | M | A | 0.0000 | |
| 111 | A | A | 0.0000 | |
| 112 | E | A | -2.0800 | |
| 113 | K | A | -1.8306 | |
| 114 | I | A | 0.0000 | |
| 115 | L | A | -0.3251 | |
| 116 | K | A | -1.6438 | |
| 117 | M | A | -0.1542 | |
| 118 | V | A | 0.3638 | |
| 119 | I | A | 0.4021 | |
| 120 | E | A | -1.6610 | |
| 121 | L | A | -0.3094 | |
| 122 | A | A | 0.0000 | |
| 123 | E | A | -2.0652 | |
| 124 | K | A | -1.6553 | |
| 125 | I | A | 0.0000 | |
| 126 | L | A | 0.7440 | |
| 127 | C | A | 0.5318 | |
| 128 | K | A | -1.5657 |