| Chain sequence(s) |
A: GVIPCGESCVFIPCINKKKCSCKNKVCYRD
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:10)
[INFO] Main: Simulation completed successfully. (00:01:11)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | 0.2219 | |
| 2 | V | A | 1.2555 | |
| 3 | I | A | 1.6856 | |
| 4 | P | A | 0.4756 | |
| 5 | C | A | 0.0620 | |
| 6 | G | A | -0.1653 | |
| 7 | E | A | 0.1087 | |
| 8 | S | A | 0.4656 | |
| 9 | C | A | 1.0485 | |
| 10 | V | A | 1.5818 | |
| 11 | F | A | 2.8297 | |
| 12 | I | A | 2.6390 | |
| 13 | P | A | 1.1817 | |
| 14 | C | A | 0.0000 | |
| 15 | I | A | 0.9988 | |
| 16 | N | A | -1.4403 | |
| 17 | K | A | -2.6867 | |
| 18 | K | A | -3.2696 | |
| 19 | K | A | -3.4114 | |
| 20 | C | A | 0.0000 | |
| 21 | S | A | -1.7654 | |
| 22 | C | A | -0.8748 | |
| 23 | K | A | -1.6494 | |
| 24 | N | A | -2.1350 | |
| 25 | K | A | -1.4887 | |
| 26 | V | A | -0.8245 | |
| 27 | C | A | 0.0000 | |
| 28 | Y | A | -0.8567 | |
| 29 | R | A | -2.2595 | |
| 30 | D | A | -1.8715 |