Project name: beta casein

Status: done

Started: 2026-06-01 14:37:27
Settings
Chain sequence(s) A: MKVLILACLVALALARELEELNVPGEIVESLSSSEESITRINKKIEKFQSEEQQQTEDELQDKIHPFAQTQSLVYPFPGPIPNSLPQNIPPLTQTPVVVPPFLQPEVMGVSKVKEAMAPKHKEMPFPKYPVEPFTESQSLTLTDVENLHLPLPLLQSWMHQPHQPLPPTVMFPPQSVLSLSQSKVLPVPQKAVPYPQRDMPIQAFLLYQEPVLGPVRGPFPIIV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:55)
Show buried residues

Minimal score value
-4.9465
Maximal score value
4.1424
Average score
0.0055
Total score value
1.2301

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.6845
2 K A 0.7662
3 V A 2.9669
4 L A 3.5893
5 I A 3.4105
6 L A 3.5331
7 A A 3.0698
8 C A 3.6528
9 L A 4.1424
10 V A 3.2913
11 A A 2.4526
12 L A 2.5322
13 A A 1.1616
14 L A 1.0792
15 A A -0.1296
16 R A -2.5024
17 E A -2.5634
18 L A -0.8239
19 E A -2.9869
20 E A -2.9972
21 L A -1.0298
22 N A -1.3759
23 V A 0.5631
24 P A 0.0371
25 G A -0.3247
26 E A -0.7441
27 I A 1.7933
28 V A 1.5920
29 E A -0.5200
30 S A 0.2781
31 L A 1.0018
32 S A -0.7757
33 S A -1.1954
34 S A -1.1972
35 E A -2.1250
36 E A -2.5694
37 S A -1.4612
38 I A -0.3885
39 T A -1.6417
40 R A -2.5977
41 I A -0.7564
42 N A -1.8281
43 K A -3.0937
44 K A -2.1540
45 I A -0.9639
46 E A -3.3249
47 K A -3.1360
48 F A -2.0283
49 Q A -3.3584
50 S A -3.4882
51 E A -4.4045
52 E A -4.7480
53 Q A -4.5088
54 Q A -4.7522
55 Q A -4.9238
56 T A -3.8750
57 E A -4.5877
58 D A -4.9465
59 E A -4.1282
60 L A -2.3622
61 Q A -3.3450
62 D A -3.6736
63 K A -2.3993
64 I A -0.1240
65 H A -1.1584
66 P A -0.4817
67 F A 1.0185
68 A A 0.0542
69 Q A -0.9242
70 T A -0.3940
71 Q A -0.5827
72 S A 0.3743
73 L A 2.1244
74 V A 3.0662
75 Y A 2.9760
76 P A 1.8468
77 F A 2.1477
78 P A 0.7495
79 G A 0.3001
80 P A 0.4309
81 I A 1.2378
82 P A 0.1043
83 N A -0.6089
84 S A -0.0836
85 L A 0.4700
86 P A -0.3338
87 Q A -1.1253
88 N A -0.8542
89 I A 1.1447
90 P A 0.5464
91 P A 0.5386
92 L A 1.3065
93 T A -0.0586
94 Q A -0.6846
95 T A 0.0733
96 P A 1.0052
97 V A 2.7731
98 V A 3.3147
99 V A 3.3583
100 P A 1.8974
101 P A 1.4212
102 F A 2.4271
103 L A 1.7163
104 Q A -0.4659
105 P A -0.4998
106 E A -1.0272
107 V A 1.2665
108 M A 1.5257
109 G A 0.8606
110 V A 1.6627
111 S A -0.0180
112 K A -1.1926
113 V A -0.2621
114 K A -2.0017
115 E A -2.0430
116 A A -0.5980
117 M A 0.0727
118 A A -0.3877
119 P A -1.2977
120 K A -2.8593
121 H A -3.0996
122 K A -3.3323
123 E A -2.4336
124 M A -0.0694
125 P A 0.1491
126 F A 1.4373
127 P A 0.3240
128 K A -0.4387
129 Y A 0.8144
130 P A 0.1640
131 V A 1.0679
132 E A -0.4335
133 P A -0.0100
134 F A 0.8473
135 T A -0.5913
136 E A -1.8259
137 S A -1.2380
138 Q A -1.3145
139 S A -0.1874
140 L A 1.2703
141 T A 0.9851
142 L A 1.5382
143 T A -0.0366
144 D A -0.8406
145 V A 0.6860
146 E A -1.5078
147 N A -1.4046
148 L A 0.5293
149 H A 0.1699
150 L A 1.7861
151 P A 1.4436
152 L A 2.0458
153 P A 1.1816
154 L A 1.9784
155 L A 2.4580
156 Q A 0.7443
157 S A 0.4474
158 W A 1.3190
159 M A 0.7504
160 H A -1.1729
161 Q A -1.7606
162 P A -1.8615
163 H A -2.0151
164 Q A -1.6775
165 P A -0.4988
166 L A 0.7372
167 P A 0.3750
168 P A 0.6125
169 T A 1.4366
170 V A 2.6642
171 M A 2.7180
172 F A 2.5816
173 P A 0.7285
174 P A -0.1709
175 Q A -0.5554
176 S A 0.2788
177 V A 2.0498
178 L A 2.4543
179 S A 1.5331
180 L A 1.3875
181 S A -0.1632
182 Q A -1.2679
183 S A -0.8675
184 K A -0.9431
185 V A 1.6682
186 L A 2.2994
187 P A 1.3291
188 V A 1.6221
189 P A -0.3612
190 Q A -1.4318
191 K A -1.6472
192 A A -0.1876
193 V A 1.3557
194 P A 0.7960
195 Y A 0.9782
196 P A -0.6602
197 Q A -2.3825
198 R A -3.1575
199 D A -2.7948
200 M A -1.1552
201 P A 0.1422
202 I A 1.9932
203 Q A 0.9985
204 A A 1.6772
205 F A 2.6655
206 L A 2.6275
207 L A 2.5159
208 Y A 1.5689
209 Q A -0.1063
210 E A -0.8940
211 P A -0.0165
212 V A 1.5611
213 L A 2.1503
214 G A 1.0092
215 P A 0.4710
216 V A 0.7690
217 R A -1.0991
218 G A -0.5331
219 P A 0.4269
220 F A 2.0775
221 P A 2.3045
222 I A 3.8038
223 I A 4.0186
224 V A 3.2452
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Laboratory of Theory of Biopolymers 2018