| Chain sequence(s) |
H: QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASNGDHWGQGTLVTVSS
L: EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPRTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:59)
[INFO] Main: Simulation completed successfully. (00:01:00)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4312 | |
| 2 | V | H | -0.9511 | |
| 3 | Q | H | -1.1388 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.3831 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.3284 | |
| 8 | G | H | -0.6492 | |
| 9 | G | H | 0.2622 | |
| 11 | G | H | 0.9729 | |
| 12 | V | H | 1.7793 | |
| 13 | V | H | -0.0390 | |
| 14 | Q | H | -1.1942 | |
| 15 | P | H | -1.7822 | |
| 16 | G | H | -2.0432 | |
| 17 | R | H | -2.5870 | |
| 18 | S | H | -1.8514 | |
| 19 | L | H | -1.0720 | |
| 20 | R | H | -1.7479 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.4053 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.3630 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.9612 | |
| 27 | G | H | -0.9733 | |
| 28 | F | H | -0.3720 | |
| 29 | T | H | -0.1129 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.7110 | |
| 36 | S | H | -0.1581 | |
| 37 | Y | H | 0.1223 | |
| 38 | G | H | -0.1800 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.6013 | |
| 45 | A | H | -1.0181 | |
| 46 | P | H | -0.7997 | |
| 47 | G | H | -1.4536 | |
| 48 | K | H | -2.3854 | |
| 49 | G | H | -1.5914 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.0275 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | V | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | W | H | -0.3202 | |
| 58 | Y | H | -0.0321 | |
| 59 | D | H | -1.4051 | |
| 62 | G | H | -1.0207 | |
| 63 | S | H | -0.9234 | |
| 64 | N | H | -0.9818 | |
| 65 | K | H | -0.7655 | |
| 66 | Y | H | -0.3435 | |
| 67 | Y | H | -0.7644 | |
| 68 | A | H | -1.4247 | |
| 69 | D | H | -2.3348 | |
| 70 | S | H | -1.6593 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.2427 | |
| 74 | G | H | -1.5607 | |
| 75 | R | H | -1.3436 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.8182 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.4112 | |
| 80 | R | H | -0.9640 | |
| 81 | D | H | -1.6495 | |
| 82 | N | H | -1.7873 | |
| 83 | S | H | -1.5846 | |
| 84 | K | H | -2.4286 | |
| 85 | N | H | -1.8659 | |
| 86 | T | H | -1.0760 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.4530 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.1562 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.7150 | |
| 93 | S | H | -1.6623 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.2972 | |
| 96 | A | H | -1.5612 | |
| 97 | E | H | -2.1776 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.3079 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.9003 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | S | H | 0.0000 | |
| 107 | N | H | -1.0931 | |
| 115 | G | H | -1.0092 | |
| 116 | D | H | -1.3320 | |
| 117 | H | H | -1.1243 | |
| 118 | W | H | -0.9754 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.3477 | |
| 121 | G | H | -0.2325 | |
| 122 | T | H | 0.5548 | |
| 123 | L | H | 1.7951 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.5906 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4410 | |
| 128 | S | H | -0.4438 | |
| 1 | E | L | -1.6266 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.6514 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.7498 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.8230 | |
| 8 | P | L | -0.3871 | |
| 9 | A | L | -0.5392 | |
| 10 | T | L | -0.5420 | |
| 11 | L | L | -0.1764 | |
| 12 | S | L | -0.2185 | |
| 13 | V | L | -0.7456 | |
| 14 | S | L | -1.2379 | |
| 15 | P | L | -1.5297 | |
| 16 | G | L | -2.1728 | |
| 17 | E | L | -3.1722 | |
| 18 | R | L | -2.9417 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.7368 | |
| 21 | L | L | 0.0000 | |
| 22 | S | L | -0.9096 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.3564 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -0.9331 | |
| 27 | Q | L | -1.4567 | |
| 28 | S | L | -1.3841 | |
| 29 | V | L | 0.0000 | |
| 36 | S | L | -0.9388 | |
| 37 | S | L | -0.7482 | |
| 38 | N | L | -0.7907 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | -0.9286 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.5775 | |
| 46 | P | L | -1.0451 | |
| 47 | G | L | -1.4595 | |
| 48 | Q | L | -2.1589 | |
| 49 | A | L | 0.0000 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -2.0106 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.2553 | |
| 56 | G | L | -0.1977 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.5087 | |
| 66 | T | L | -0.3699 | |
| 67 | R | L | -0.8205 | |
| 68 | A | L | -0.7105 | |
| 69 | T | L | -0.4752 | |
| 70 | G | L | -0.4904 | |
| 71 | I | L | -0.3990 | |
| 72 | P | L | -0.2828 | |
| 74 | A | L | -0.2801 | |
| 75 | R | L | -0.6197 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.4625 | |
| 78 | G | L | -0.4112 | |
| 79 | S | L | -0.6966 | |
| 80 | G | L | -1.1499 | |
| 83 | S | L | -1.2125 | |
| 84 | G | L | -1.2950 | |
| 85 | T | L | -1.7876 | |
| 86 | E | L | -2.3075 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.8207 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6065 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.5430 | |
| 93 | S | L | -2.0149 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -1.9648 | |
| 96 | S | L | -1.1640 | |
| 97 | E | L | -1.7955 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.3514 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.5331 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | -0.3879 | |
| 108 | N | L | -1.2158 | |
| 109 | N | L | -1.4911 | |
| 114 | W | L | -0.5655 | |
| 115 | P | L | -0.8065 | |
| 116 | R | L | -0.4495 | |
| 117 | T | L | 0.0000 | |
| 118 | F | L | 0.0495 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.3434 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.1133 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -0.0864 | |
| 126 | I | L | 0.8666 | |
| 127 | K | L | -0.8244 |