| Chain sequence(s) |
D: MVVKVGINGFGRIGRLAFRRIQNVEGVEVTRINDLTDPNMLAHLLKYDTTQGRFDGTVEVKEGGFEVNGQFVKVSAEREPANIDWATDGVEIVLEATGFFASKEKAEQHIHENGAKKVVITAPGGNDVKTVVFNTNHDILDGTETVISGASCTTNCLAPMAKALQDNFGVKQGLMTTIHAYTGDQMILDGPHRGGDLRRARAGAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVPTGSVTELVATLEKDVTVEEVNAAMKAAANDSYGYTEDPIVSSDIVGISYGSLFDATQTKVQTVDGNQLVKVVSWYDNEMSYTSQLVRTLEYFAKIAK
input PDB |
| Selected Chain(s) | D |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with D chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:03)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | M | D | 1.3595 | |
| 2 | V | D | 1.5033 | |
| 3 | V | D | 0.0459 | |
| 4 | K | D | -0.5959 | |
| 5 | V | D | 0.0000 | |
| 6 | G | D | 0.0000 | |
| 7 | I | D | 0.0000 | |
| 8 | N | D | 0.0000 | |
| 9 | G | D | 0.0000 | |
| 10 | F | D | 0.0000 | |
| 11 | G | D | -0.4156 | |
| 12 | R | D | -0.5382 | |
| 13 | I | D | -0.0315 | |
| 14 | G | D | 0.0000 | |
| 15 | R | D | 0.0000 | |
| 16 | L | D | 0.0000 | |
| 17 | A | D | 0.0000 | |
| 18 | F | D | 0.0000 | |
| 19 | R | D | -1.0539 | |
| 20 | R | D | -1.1238 | |
| 21 | I | D | 0.0000 | |
| 22 | Q | D | -2.1811 | |
| 23 | N | D | -2.1609 | |
| 24 | V | D | -1.6628 | |
| 25 | E | D | -1.8294 | |
| 26 | G | D | -0.4071 | |
| 27 | V | D | 0.0000 | |
| 28 | E | D | -0.9559 | |
| 29 | V | D | 0.0000 | |
| 30 | T | D | -0.5292 | |
| 31 | R | D | 0.0000 | |
| 32 | I | D | 0.0000 | |
| 33 | N | D | 0.0000 | |
| 34 | D | D | -0.3181 | |
| 35 | L | D | 0.5887 | |
| 36 | T | D | -0.2113 | |
| 37 | D | D | -1.7156 | |
| 38 | P | D | -1.8632 | |
| 39 | N | D | -2.0379 | |
| 40 | M | D | -0.1650 | |
| 41 | L | D | 0.0000 | |
| 42 | A | D | 0.0000 | |
| 43 | H | D | -0.7875 | |
| 44 | L | D | -0.1616 | |
| 45 | L | D | 0.0000 | |
| 46 | K | D | -1.4878 | |
| 47 | Y | D | -0.6535 | |
| 48 | D | D | -0.7013 | |
| 49 | T | D | -0.3662 | |
| 50 | T | D | -0.3470 | |
| 51 | Q | D | -0.6169 | |
| 52 | G | D | -1.4754 | |
| 53 | R | D | -2.3541 | |
| 54 | F | D | -1.9258 | |
| 55 | D | D | -2.6478 | |
| 56 | G | D | -2.0191 | |
| 57 | T | D | -1.7545 | |
| 58 | V | D | -1.7291 | |
| 59 | E | D | -2.3748 | |
| 60 | V | D | -1.6010 | |
| 61 | K | D | -2.5255 | |
| 62 | E | D | -2.7640 | |
| 63 | G | D | -1.9267 | |
| 64 | G | D | 0.0000 | |
| 65 | F | D | 0.0000 | |
| 66 | E | D | -1.4424 | |
| 67 | V | D | 0.0000 | |
| 68 | N | D | -2.3664 | |
| 69 | G | D | -1.7549 | |
| 70 | Q | D | -1.4985 | |
| 71 | F | D | -0.3408 | |
| 72 | V | D | 0.0000 | |
| 73 | K | D | -1.0713 | |
| 74 | V | D | 0.0000 | |
| 75 | S | D | -0.7530 | |
| 76 | A | D | -0.6804 | |
| 77 | E | D | -1.8327 | |
| 78 | R | D | -2.6033 | |
| 79 | E | D | -2.8158 | |
| 80 | P | D | 0.0000 | |
| 81 | A | D | -2.0507 | |
| 82 | N | D | -2.5049 | |
| 83 | I | D | 0.0000 | |
| 84 | D | D | -1.8715 | |
| 85 | W | D | 0.0000 | |
| 86 | A | D | -1.6568 | |
| 87 | T | D | -0.7896 | |
| 88 | D | D | -1.0689 | |
| 89 | G | D | -0.9931 | |
| 90 | V | D | 0.0000 | |
| 91 | E | D | -1.5546 | |
| 92 | I | D | 0.0000 | |
| 93 | V | D | 0.0000 | |
| 94 | L | D | 0.0000 | |
| 95 | E | D | 0.0000 | |
| 96 | A | D | 0.1438 | |
| 97 | T | D | 0.3420 | |
| 98 | G | D | 0.3895 | |
| 99 | F | D | 1.6819 | |
| 100 | F | D | 0.0554 | |
| 101 | A | D | -0.2921 | |
| 102 | S | D | -1.6763 | |
| 103 | K | D | -2.7569 | |
| 104 | E | D | -3.0599 | |
| 105 | K | D | -2.1014 | |
| 106 | A | D | 0.0000 | |
| 107 | E | D | -1.9985 | |
| 108 | Q | D | -1.6881 | |
| 109 | H | D | 0.0000 | |
| 110 | I | D | -1.1621 | |
| 111 | H | D | -2.0191 | |
| 112 | E | D | -2.8012 | |
| 113 | N | D | -2.8242 | |
| 114 | G | D | -2.2313 | |
| 115 | A | D | 0.0000 | |
| 116 | K | D | -2.5450 | |
| 117 | K | D | 0.0000 | |
| 118 | V | D | 0.0000 | |
| 119 | V | D | 0.0000 | |
| 120 | I | D | 0.0000 | |
| 121 | T | D | -0.0349 | |
| 122 | A | D | -0.2216 | |
| 123 | P | D | -0.7491 | |
| 124 | G | D | 0.0000 | |
| 125 | G | D | -1.8188 | |
| 126 | N | D | -2.5820 | |
| 127 | D | D | -3.0038 | |
| 128 | V | D | 0.0000 | |
| 129 | K | D | -1.3322 | |
| 130 | T | D | 0.0000 | |
| 131 | V | D | 0.0000 | |
| 132 | V | D | 0.0000 | |
| 133 | F | D | -0.5385 | |
| 134 | N | D | -1.1893 | |
| 135 | T | D | -0.5311 | |
| 136 | N | D | 0.0000 | |
| 137 | H | D | -1.0351 | |
| 138 | D | D | -1.7486 | |
| 139 | I | D | -0.5307 | |
| 140 | L | D | 0.0000 | |
| 141 | D | D | -1.9066 | |
| 142 | G | D | 0.0000 | |
| 143 | T | D | -1.1454 | |
| 144 | E | D | -1.1309 | |
| 145 | T | D | -0.9281 | |
| 146 | V | D | 0.0000 | |
| 147 | I | D | 0.0000 | |
| 148 | S | D | 0.0000 | |
| 149 | G | D | 0.0000 | |
| 150 | A | D | 0.0000 | |
| 151 | S | D | -0.0901 | |
| 152 | C | D | 0.1071 | |
| 153 | T | D | 0.0000 | |
| 154 | T | D | 0.0000 | |
| 155 | N | D | 0.0000 | |
| 156 | C | D | 0.0000 | |
| 157 | L | D | 0.0000 | |
| 158 | A | D | 0.0000 | |
| 159 | P | D | -0.3820 | |
| 160 | M | D | 0.0000 | |
| 161 | A | D | 0.0000 | |
| 162 | K | D | -1.4908 | |
| 163 | A | D | 0.0000 | |
| 164 | L | D | 0.0000 | |
| 165 | Q | D | -2.4793 | |
| 166 | D | D | -2.5191 | |
| 167 | N | D | -2.5820 | |
| 168 | F | D | 0.0000 | |
| 169 | G | D | 0.0000 | |
| 170 | V | D | 0.0000 | |
| 171 | K | D | -3.0995 | |
| 172 | Q | D | -2.2124 | |
| 173 | G | D | 0.0000 | |
| 174 | L | D | 0.8907 | |
| 175 | M | D | 0.0000 | |
| 176 | T | D | 0.2070 | |
| 177 | T | D | 0.0000 | |
| 178 | I | D | 0.6763 | |
| 179 | H | D | 0.0000 | |
| 180 | A | D | 0.0000 | |
| 181 | Y | D | 0.5613 | |
| 182 | T | D | -0.2070 | |
| 183 | G | D | -0.6610 | |
| 184 | D | D | -1.2454 | |
| 185 | Q | D | 0.0000 | |
| 186 | M | D | 0.1838 | |
| 187 | I | D | 2.1361 | |
| 188 | L | D | 1.3531 | |
| 189 | D | D | -1.2652 | |
| 190 | G | D | -0.7022 | |
| 191 | P | D | -1.1495 | |
| 192 | H | D | -2.0945 | |
| 193 | R | D | -2.3785 | |
| 194 | G | D | -1.7380 | |
| 195 | G | D | -1.4137 | |
| 196 | D | D | -1.3211 | |
| 197 | L | D | -0.5332 | |
| 198 | R | D | -1.9255 | |
| 199 | R | D | -1.7877 | |
| 200 | A | D | -1.5511 | |
| 201 | R | D | -1.4600 | |
| 202 | A | D | 0.0000 | |
| 203 | G | D | 0.0000 | |
| 204 | A | D | 0.9437 | |
| 205 | A | D | 0.5158 | |
| 206 | N | D | 0.1852 | |
| 207 | I | D | 1.4705 | |
| 208 | V | D | 0.0000 | |
| 209 | P | D | -0.3543 | |
| 210 | N | D | -0.5740 | |
| 211 | S | D | -0.6818 | |
| 212 | T | D | -0.8184 | |
| 213 | G | D | -1.2792 | |
| 214 | A | D | 0.0000 | |
| 215 | A | D | 0.0000 | |
| 216 | K | D | -2.4305 | |
| 217 | A | D | -1.6683 | |
| 218 | I | D | 0.0000 | |
| 219 | G | D | 0.0000 | |
| 220 | L | D | -1.0182 | |
| 221 | V | D | 0.0000 | |
| 222 | I | D | 0.0000 | |
| 223 | P | D | -1.4387 | |
| 224 | E | D | -2.3514 | |
| 225 | L | D | 0.0000 | |
| 226 | N | D | -2.5137 | |
| 227 | G | D | -2.3631 | |
| 228 | K | D | -2.5260 | |
| 229 | L | D | 0.0000 | |
| 230 | D | D | -1.4046 | |
| 231 | G | D | -0.4086 | |
| 232 | A | D | -0.2040 | |
| 233 | A | D | 0.0000 | |
| 234 | Q | D | 0.1419 | |
| 235 | R | D | 0.2483 | |
| 236 | V | D | 0.9820 | |
| 237 | P | D | 0.5631 | |
| 238 | V | D | 0.4244 | |
| 239 | P | D | 0.1024 | |
| 240 | T | D | 0.0000 | |
| 241 | G | D | 0.0000 | |
| 242 | S | D | 0.0000 | |
| 243 | V | D | 0.4619 | |
| 244 | T | D | 0.0000 | |
| 245 | E | D | -0.0019 | |
| 246 | L | D | 0.0000 | |
| 247 | V | D | 0.9047 | |
| 248 | A | D | 0.0000 | |
| 249 | T | D | -1.3349 | |
| 250 | L | D | 0.0000 | |
| 251 | E | D | -3.7832 | |
| 252 | K | D | -3.8392 | |
| 253 | D | D | -3.3273 | |
| 254 | V | D | 0.0000 | |
| 255 | T | D | -1.6909 | |
| 256 | V | D | -1.3737 | |
| 257 | E | D | -2.4106 | |
| 258 | E | D | -2.6023 | |
| 259 | V | D | 0.0000 | |
| 260 | N | D | -1.9032 | |
| 261 | A | D | -1.5131 | |
| 262 | A | D | 0.0000 | |
| 263 | M | D | 0.0000 | |
| 264 | K | D | -1.8706 | |
| 265 | A | D | -0.8531 | |
| 266 | A | D | -0.9259 | |
| 267 | A | D | -1.1761 | |
| 268 | N | D | -1.8755 | |
| 269 | D | D | -2.1138 | |
| 270 | S | D | 0.0000 | |
| 271 | Y | D | 0.0000 | |
| 272 | G | D | 0.0000 | |
| 273 | Y | D | -0.9099 | |
| 274 | T | D | -1.6005 | |
| 275 | E | D | -2.7341 | |
| 276 | D | D | -2.4681 | |
| 277 | P | D | -1.2572 | |
| 278 | I | D | -0.2330 | |
| 279 | V | D | 1.1327 | |
| 280 | S | D | 0.4183 | |
| 281 | S | D | -0.3447 | |
| 282 | D | D | -1.1344 | |
| 283 | I | D | 0.0000 | |
| 284 | V | D | 0.0067 | |
| 285 | G | D | -0.1538 | |
| 286 | I | D | 0.2059 | |
| 287 | S | D | -0.0090 | |
| 288 | Y | D | 0.0182 | |
| 289 | G | D | 0.0000 | |
| 290 | S | D | 0.0000 | |
| 291 | L | D | 0.0000 | |
| 292 | F | D | 0.0000 | |
| 293 | D | D | 0.0000 | |
| 294 | A | D | -1.6764 | |
| 295 | T | D | -1.4150 | |
| 296 | Q | D | -1.1370 | |
| 297 | T | D | 0.0000 | |
| 298 | K | D | -1.9003 | |
| 299 | V | D | -0.9586 | |
| 300 | Q | D | -1.1521 | |
| 301 | T | D | -0.8990 | |
| 302 | V | D | 0.1604 | |
| 303 | D | D | -1.7080 | |
| 304 | G | D | -1.7329 | |
| 305 | N | D | -1.7959 | |
| 306 | Q | D | -1.3835 | |
| 307 | L | D | 0.2531 | |
| 308 | V | D | 0.0000 | |
| 309 | K | D | -0.4867 | |
| 310 | V | D | 0.0000 | |
| 311 | V | D | 0.0000 | |
| 312 | S | D | 0.0000 | |
| 313 | W | D | 0.0000 | |
| 314 | Y | D | 0.0000 | |
| 315 | D | D | 0.0000 | |
| 316 | N | D | 0.0000 | |
| 317 | E | D | 0.0000 | |
| 318 | M | D | 0.0000 | |
| 319 | S | D | 0.0000 | |
| 320 | Y | D | 0.0000 | |
| 321 | T | D | 0.0000 | |
| 322 | S | D | 0.0000 | |
| 323 | Q | D | 0.0000 | |
| 324 | L | D | 0.0000 | |
| 325 | V | D | 0.0000 | |
| 326 | R | D | -0.4522 | |
| 327 | T | D | 0.0000 | |
| 328 | L | D | 0.0000 | |
| 329 | E | D | -1.0562 | |
| 330 | Y | D | -0.4850 | |
| 331 | F | D | 0.0000 | |
| 332 | A | D | 0.0000 | |
| 333 | K | D | -1.3656 | |
| 334 | I | D | -1.1947 | |
| 335 | A | D | -1.7439 | |
| 336 | K | D | -2.3242 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine