Project name: 27c48e8d137d1a3

Status: done

Started: 2026-06-22 16:04:55
Settings
Chain sequence(s) B: AALRALMAEEDARLARAKEVLDQLLELGQITEEQRERFLELMERLREARL
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:48)
Show buried residues

Minimal score value
-4.2087
Maximal score value
1.1958
Average score
-1.8644
Total score value
-93.2206

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A B 0.1954
2 A B 0.7514
3 L B 1.1958
4 R B -0.7318
5 A B -0.1372
6 L B 0.6029
7 M B -0.6128
8 A B -1.3187
9 E B -2.3397
10 E B -2.6774
11 D B -2.8170
12 A B -2.6056
13 R B -3.7219
14 L B -2.7982
15 A B -2.5551
16 R B -3.2203
17 A B -1.8745
18 K B -2.3877
19 E B -2.5327
20 V B -0.3646
21 L B 0.0000
22 D B -1.7732
23 Q B -1.1563
24 L B -0.4757
25 L B -1.3445
26 E B -1.5003
27 L B 0.1081
28 G B -0.9221
29 Q B -1.0821
30 I B -1.3309
31 T B -2.4986
32 E B -3.8418
33 E B -4.0946
34 Q B -3.5136
35 R B -3.0048
36 E B -4.2087
37 R B -3.7284
38 F B -1.7699
39 L B -2.0888
40 E B -2.8565
41 L B -1.2973
42 M B -1.9066
43 E B -3.5787
44 R B -3.4016
45 L B -2.0800
46 R B -3.0766
47 E B -3.0568
48 A B -2.0287
49 R B -1.9547
50 L B 0.1928
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018