| Chain sequence(s) |
A: FFKGHGG
C: FFKGHGG B: FFKGHGG E: FFKGHGG D: FFKGHGG G: FFKGHGG F: FFKGHGG I: FFKGHGG H: FFKGHGG K: FFKGHGG J: FFKGHGG L: FFKGHGG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:59)
[INFO] Main: Simulation completed successfully. (00:05:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.2678 | |
| 2 | F | A | 0.0000 | |
| 3 | K | A | -1.4055 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -1.5366 | |
| 6 | G | A | 0.0000 | |
| 7 | G | A | -0.2871 | |
| 1 | F | B | 1.4388 | |
| 2 | F | B | 0.0000 | |
| 3 | K | B | -1.9112 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | -1.6262 | |
| 6 | G | B | -0.2723 | |
| 7 | G | B | -0.1630 | |
| 1 | F | C | 2.0280 | |
| 2 | F | C | 0.4836 | |
| 3 | K | C | -1.5629 | |
| 4 | G | C | -1.9825 | |
| 5 | H | C | -1.9191 | |
| 6 | G | C | -0.6942 | |
| 7 | G | C | -0.5839 | |
| 1 | F | D | 1.5698 | |
| 2 | F | D | 0.0000 | |
| 3 | K | D | -1.3150 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | -1.7794 | |
| 6 | G | D | 0.0000 | |
| 7 | G | D | -0.5284 | |
| 1 | F | E | 1.4737 | |
| 2 | F | E | 0.0000 | |
| 3 | K | E | -1.1340 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | -1.4836 | |
| 6 | G | E | 0.0000 | |
| 7 | G | E | -0.4751 | |
| 1 | F | F | 1.8977 | |
| 2 | F | F | 0.0000 | |
| 3 | K | F | -0.9412 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -1.4885 | |
| 6 | G | F | 0.0000 | |
| 7 | G | F | -0.5968 | |
| 1 | F | G | 1.5729 | |
| 2 | F | G | 0.0000 | |
| 3 | K | G | -1.0786 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | -1.8250 | |
| 6 | G | G | 0.0000 | |
| 7 | G | G | -0.6850 | |
| 1 | F | H | 1.5810 | |
| 2 | F | H | -0.0880 | |
| 3 | K | H | -1.8329 | |
| 4 | G | H | -2.1236 | |
| 5 | H | H | -1.6871 | |
| 6 | G | H | -0.2558 | |
| 7 | G | H | -0.0552 | |
| 1 | F | I | 2.4356 | |
| 2 | F | I | 1.3007 | |
| 3 | K | I | -1.3586 | |
| 4 | G | I | -2.2582 | |
| 5 | H | I | -2.1515 | |
| 6 | G | I | -0.9448 | |
| 7 | G | I | -0.4961 | |
| 1 | F | J | 1.6474 | |
| 2 | F | J | 0.0000 | |
| 3 | K | J | -1.3654 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | -2.1085 | |
| 6 | G | J | 0.0000 | |
| 7 | G | J | -0.4030 | |
| 1 | F | K | 1.2436 | |
| 2 | F | K | 0.0000 | |
| 3 | K | K | -1.4653 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | -1.3734 | |
| 6 | G | K | 0.0000 | |
| 7 | G | K | -0.3320 | |
| 1 | F | L | 1.2347 | |
| 2 | F | L | 0.0000 | |
| 3 | K | L | -1.3973 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | -1.3057 | |
| 6 | G | L | 0.0000 | |
| 7 | G | L | -0.3575 |