Project name: query_structure

Status: done

Started: 2026-03-17 00:58:10
Settings
Chain sequence(s) A: VSGITALTVVVGTVIGAGIFFKPTAVYGAAGAPGLGLLAWFVAGIITIAGGLTVAEIGTIYPQTGGMMIYLEKVYGRWLGFLVGWAQMVIYYPANIAALAIIFATQFVNLFALSDSTIVPTAILTSIFLMGVNFLGTKYSGWIQTLATILKLIPLVVIIVAGLLYPGGGVIRLVPFSVETHPVLTSFGSALIATLFAYDGWINVGTLAGEMKNPGKMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQLAGTDTPAALVASHLFEGIGSKLVTIGILISVFGGINGYIISGLRVPYALATQKMLPFSDWFARINPKTNLPINGGLVMLGIAIVMILTGQFNQLTDLIVFVIWFFITLTFIAVIILRKTQPDIERPYRVPFYPVIPLIAIIGGLYIIFNTLIVQPKNAFIGILLTLIGIPIYFYCKKKYGS
B: QVQLVESGGGVVQAGGSLRLSCAASGRTFSSRAMGWFRQAPGEGREFVATISWSGSYTEYADSVKGRVTISRDNAKNTVYLQMNSLKPGDTAVYHCAAKNGGAASNYPNDYVYWGQGTQVTVSSHHHHHHE
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:36)
Show buried residues

Minimal score value
-2.8513
Maximal score value
3.3196
Average score
0.043
Total score value
24.1493

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
4 V A 2.3112
5 S A 1.2761
6 G A 1.2620
7 I A 2.6507
8 T A 1.5475
9 A A 1.2846
10 L A 1.4036
11 T A 1.0484
12 V A 1.2763
13 V A 0.0000
14 V A 0.7177
15 G A 0.6413
16 T A -0.0103
17 V A 0.0000
18 I A 0.0000
19 G A -0.1888
20 A A 0.0000
21 G A 0.0000
22 I A 0.0000
23 F A 0.0000
24 F A 0.0000
25 K A 0.0000
26 P A 0.0000
27 T A -0.8520
28 A A -0.5731
29 V A 0.0000
30 Y A 0.0000
31 G A -0.4933
32 A A -0.1270
33 A A 0.0000
34 G A -0.2119
35 A A 0.0000
36 P A 0.0000
37 G A 1.5601
38 L A 0.0000
39 G A 0.0000
40 L A 1.2092
41 L A 1.3752
42 A A 0.0000
43 W A 0.0000
44 F A 1.7185
45 V A 1.3173
46 A A 0.0000
47 G A 0.0000
48 I A 1.4995
49 I A 0.0000
50 T A 0.0000
51 I A 0.8839
52 A A 0.0000
53 G A 0.0000
54 G A 0.0000
55 L A 0.0000
56 T A 0.0000
57 V A 0.0000
58 A A 0.0000
59 E A 0.0000
60 I A 0.0000
61 G A 0.0000
62 T A 0.0000
63 I A 0.0000
64 Y A 0.0000
65 P A 0.0000
66 Q A 0.0000
67 T A -0.4661
68 G A -0.4678
69 G A -0.3402
70 M A 0.0000
71 M A -0.4456
72 I A 0.0000
73 Y A 0.0000
74 L A 0.0000
75 E A -1.3252
76 K A -1.6278
77 V A -0.3328
78 Y A -0.1801
79 G A -0.9636
80 R A -1.7277
81 W A 0.1046
82 L A 0.0000
83 G A 0.0000
84 F A 0.0000
85 L A 0.0000
86 V A 0.0000
87 G A 0.0000
88 W A 0.5292
89 A A 0.0000
90 Q A -0.0902
91 M A 0.0000
92 V A 0.0000
93 I A 0.0000
94 Y A 0.0000
95 Y A 0.0000
96 P A 0.0000
97 A A 0.0000
98 N A 0.0000
99 I A 0.0000
100 A A 0.0000
101 A A 0.0000
102 L A 0.0000
103 A A 0.0000
104 I A 0.0000
105 I A 0.0000
106 F A 0.4103
107 A A 0.0000
108 T A -0.3416
109 Q A 0.0000
110 F A 1.0253
111 V A 0.0000
112 N A -0.4365
113 L A 0.7086
114 F A 1.3921
115 A A 0.8523
116 L A 1.1280
117 S A -0.3957
118 D A -1.6368
119 S A -0.7667
120 T A -0.1663
121 I A 0.0840
122 V A 0.9141
123 P A 0.8110
124 T A 1.0025
125 A A 0.0000
126 I A 2.1792
127 L A 2.5742
128 T A 1.7955
129 S A 0.0000
130 I A 2.4100
131 F A 2.4694
132 L A 0.0000
133 M A 0.0000
134 G A 1.1614
135 V A 0.0000
136 N A 0.0000
137 F A 0.9853
138 L A 1.2004
139 G A 0.0000
140 T A -0.2131
141 K A -0.9468
142 Y A 0.3375
143 S A 0.0000
144 G A 0.1092
145 W A 0.9163
146 I A 0.0000
147 Q A 0.7232
148 T A 1.0380
149 L A 1.6572
150 A A 0.0000
151 T A 1.4731
152 I A 2.7165
153 L A 2.1648
154 K A 1.6183
155 L A 2.1985
156 I A 3.0988
157 P A 0.0000
158 L A 0.0000
159 V A 3.1350
160 V A 2.5580
161 I A 0.0000
162 I A 2.5577
163 V A 3.1843
164 A A 2.1361
165 G A 0.0000
166 L A 2.0246
167 L A 2.2671
168 Y A 1.0883
169 P A 0.0910
170 G A -0.1637
171 G A 0.6079
172 G A 1.5951
173 V A 2.9677
174 I A 3.1520
175 R A 1.4337
176 L A 2.3734
177 V A 3.3196
178 P A 1.9966
179 F A 2.4782
180 S A 0.8811
181 V A -0.0996
182 E A -1.5224
183 T A -0.9720
184 H A -0.6272
185 P A -0.1587
186 V A 1.3434
187 L A 1.8603
188 T A 1.1876
189 S A 0.0000
190 F A 0.8893
191 G A 0.0000
192 S A 0.2392
193 A A 0.0000
194 L A 0.0000
195 I A 0.0000
196 A A 0.0000
197 T A 0.0000
198 L A 0.0000
199 F A 0.0000
200 A A 0.0000
201 Y A 0.0000
202 D A -0.3311
203 G A -0.3979
204 W A 0.0000
205 I A -0.3264
206 N A -1.0375
207 V A 0.0000
208 G A 0.0000
209 T A -0.4106
210 L A -0.0397
211 A A 0.0000
212 G A 0.0000
213 E A -0.9413
214 M A -0.9230
215 K A -1.9101
216 N A -2.1517
217 P A 0.0000
218 G A -1.9153
219 K A -2.1043
220 M A -1.2739
221 L A 0.0000
222 P A -1.1054
223 K A -1.6143
224 V A 0.0000
225 I A 0.0000
226 I A 0.6277
227 G A 0.3545
228 G A 0.0000
229 L A 0.0000
230 S A 0.9445
231 I A 1.1230
232 V A 0.0000
233 M A 0.0000
234 A A 0.8709
235 V A 1.1240
236 Y A 0.0000
237 L A 1.1586
238 L A 1.5583
239 T A 0.0000
240 N A 0.0000
241 I A 0.9657
242 A A 0.0000
243 Y A 0.0000
244 L A 0.0000
245 F A 0.0000
246 V A 0.0000
247 L A 0.0000
248 D A -0.8911
249 S A -0.7784
250 S A -0.9396
251 Q A -1.2297
252 L A 0.0000
253 A A -1.0825
254 G A -1.3085
255 T A -1.3310
256 D A -1.9888
257 T A 0.0000
258 P A 0.0000
259 A A 0.0000
260 A A 0.0000
261 L A 0.0718
262 V A 0.0000
263 A A 0.0000
264 S A -0.5342
265 H A -0.7694
266 L A 0.1136
267 F A -0.3513
268 E A -1.6922
269 G A -0.3476
270 I A 1.4719
271 G A 0.6376
272 S A 0.2942
273 K A 0.7036
274 L A 1.9534
275 V A 0.0000
276 T A 0.0000
277 I A 1.0363
278 G A 0.0000
279 I A 0.0000
280 L A 0.0000
281 I A 0.9117
282 S A 0.0000
283 V A 0.0000
284 F A 0.4052
285 G A 0.0000
286 G A 0.0764
287 I A 0.0000
288 N A 0.0000
289 G A 0.1154
290 Y A 0.3345
291 I A 0.0000
292 I A 0.6046
293 S A 0.2233
294 G A 0.0000
295 L A 0.0000
296 R A -0.2739
297 V A 0.0000
298 P A 0.0000
299 Y A 0.0000
300 A A -0.1922
301 L A 0.0000
302 A A 0.0000
303 T A 0.0000
304 Q A -0.6074
305 K A -0.6148
306 M A 0.0000
307 L A 0.0000
308 P A 0.6973
309 F A 1.5627
310 S A 0.0000
311 D A -1.3377
312 W A -0.3865
313 F A 0.0000
314 A A -1.2835
315 R A -2.7784
316 I A 0.0000
317 N A -1.8953
318 P A -2.0115
319 K A -1.7705
320 T A -0.8984
321 N A -1.0639
322 L A 0.0000
323 P A 0.0000
324 I A 0.4266
325 N A 0.2026
326 G A 0.0000
327 G A 0.0000
328 L A 1.2618
329 V A 1.1695
330 M A 0.0000
331 L A 1.1954
332 G A 1.1954
333 I A 1.5667
334 A A 0.0000
335 I A 2.1361
336 V A 2.5525
337 M A 0.0000
338 I A 0.0000
339 L A 2.1656
340 T A 0.7845
341 G A -0.4244
342 Q A -1.3717
343 F A 0.0000
344 N A -1.3755
345 Q A -1.6367
346 L A 0.0000
347 T A 0.0000
348 D A -0.6174
349 L A 0.0000
350 I A 0.0000
351 V A 0.0000
352 F A 0.0000
353 V A 0.0000
354 I A 0.0000
355 W A 0.0000
356 F A 1.3862
357 F A 0.0000
358 I A 0.0000
359 T A 0.0000
360 L A 0.8490
361 T A 0.0000
362 F A 0.0000
363 I A 1.2492
364 A A 0.0000
365 V A 0.0000
366 I A 0.3368
367 I A 0.0197
368 L A 0.0000
369 R A -1.5230
370 K A -2.2895
371 T A -1.4074
372 Q A -2.1559
373 P A -2.2454
374 D A -2.6100
375 I A -1.5201
376 E A -2.3511
377 R A 0.0000
378 P A -1.4375
379 Y A 0.0000
380 R A -1.8236
381 V A 0.0000
382 P A 0.7500
383 F A 2.3345
384 Y A 1.4188
385 P A 1.6559
386 V A 2.8228
387 I A 2.3511
388 P A 0.0000
389 L A 2.4197
390 I A 2.5071
391 A A 0.0000
392 I A 0.0000
393 I A 2.7649
394 G A 1.8869
395 G A 0.0000
396 L A 2.1380
397 Y A 1.7035
398 I A 0.0000
399 I A 0.0000
400 F A 2.9630
401 N A 2.1364
402 T A 0.0000
403 L A 2.2396
404 I A 2.6982
405 V A 1.6517
406 Q A 0.3371
407 P A 0.3867
408 K A -0.5497
409 N A -0.0300
410 A A 0.0000
411 F A 2.3291
412 I A 2.1904
413 G A 0.0000
414 I A 2.6493
415 L A 2.8134
416 L A 2.2061
417 T A 0.0000
418 L A 2.5297
419 I A 2.2363
420 G A 0.0000
421 I A 1.7555
422 P A 1.2029
423 I A 1.3463
424 Y A 0.0000
425 F A 0.9847
426 Y A 0.3437
427 C A 0.0000
428 K A -0.9432
429 K A -1.9835
430 K A -1.8477
431 Y A -0.1934
432 G A -0.0528
433 S A 0.0460
1 Q B -1.7148
2 V B 0.0000
3 Q B -1.2138
4 L B 0.0000
5 V B 0.9150
6 E B 0.0147
7 S B -0.5336
8 G B -1.1880
9 G B -0.7324
10 G B 0.2974
11 V B 1.2251
12 V B -0.1228
13 Q B -1.5336
14 A B -1.6158
15 G B -1.5831
16 G B -1.0069
17 S B -1.3243
18 L B -0.9723
19 R B -1.8779
20 L B 0.0000
21 S B -0.4117
22 C B 0.0000
23 A B -0.1404
24 A B -0.7413
25 S B -0.9862
26 G B -1.6700
27 R B -2.1018
28 T B -1.3433
29 F B 0.0000
30 S B -1.0513
31 S B -1.0883
32 R B 0.0000
33 A B 0.0000
34 M B 0.0000
35 G B 0.0000
36 W B 0.0000
37 F B 0.0000
38 R B 0.0000
39 Q B -1.2826
40 A B -1.2952
41 P B -1.0214
42 G B -1.5196
43 E B -2.8513
44 G B -2.4309
45 R B -1.7929
46 E B -1.6804
47 F B 0.0000
48 V B 0.0000
49 A B 0.0000
50 T B 0.0000
51 I B 0.0000
52 S B 0.0000
53 W B -0.5640
54 S B -0.5540
55 G B -0.4760
56 S B -0.5399
57 Y B 0.0000
58 T B -0.1005
59 E B 0.0000
60 Y B -0.6915
61 A B 0.0000
62 D B -1.1111
63 S B -0.9601
64 V B 0.0000
65 K B -2.2498
66 G B -1.6733
67 R B -1.7448
68 V B 0.0000
69 T B -0.8597
70 I B 0.0000
71 S B -0.4348
72 R B -0.8813
73 D B -1.3699
74 N B -1.2996
75 A B -1.2120
76 K B -2.0948
77 N B -1.6469
78 T B -0.7851
79 V B 0.0000
80 Y B -0.5538
81 L B 0.0000
82 Q B -1.1889
83 M B 0.0000
84 N B -1.6006
85 S B -1.4747
86 L B 0.0000
87 K B -2.4683
88 P B -1.5206
89 G B -1.1791
90 D B 0.0000
91 T B -0.5212
92 A B 0.0000
93 V B -0.5974
94 Y B 0.0000
95 H B 0.0000
96 C B 0.0000
97 A B 0.0000
98 A B 0.0000
99 K B 0.0000
100 N B -1.1135
101 G B -1.0911
102 G B 0.0000
103 A B 0.0000
104 A B 0.0000
105 S B 0.0000
106 N B 0.0000
107 Y B 0.0000
108 P B 0.0000
109 N B -0.3883
110 D B -0.4431
111 Y B 0.0000
112 V B 1.4851
113 Y B 0.5896
114 W B 0.4756
115 G B 0.0000
116 Q B -1.0966
117 G B -0.6790
118 T B -0.8060
119 Q B -1.1763
120 V B 0.0000
121 T B -0.1708
122 V B 0.0000
123 S B -1.2161
124 S B -1.5396
125 H B -1.9087
126 H B -2.0209
127 H B -2.3129
128 H B -2.2355
129 H B -2.5704
130 H B -2.6666
131 E B -2.5120
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Laboratory of Theory of Biopolymers 2018