Project name: GKGHKGH12

Status: done

Started: 2026-02-23 04:53:46
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Chain sequence(s) A: GKGHKGH
C: GKGHKGH
B: GKGHKGH
E: GKGHKGH
D: GKGHKGH
G: GKGHKGH
F: GKGHKGH
I: GKGHKGH
H: GKGHKGH
K: GKGHKGH
J: GKGHKGH
L: GKGHKGH
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:21)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:25)
Show buried residues

Minimal score value
-5.3064
Maximal score value
0.0
Average score
-3.3877
Total score value
-284.5685

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.7400
2 K A -4.0139
3 G A -3.8581
4 H A -4.3762
5 K A -5.3064
6 G A -4.5746
7 H A -4.3739
1 G B -4.0738
2 K B -4.3257
3 G B 0.0000
4 H B -4.7201
5 K B -4.7145
6 G B -4.3762
7 H B -4.1498
1 G C -3.3009
2 K C -3.3723
3 G C -3.0723
4 H C -3.0559
5 K C -3.3991
6 G C -2.7209
7 H C -3.2980
1 G D -2.5811
2 K D -3.2372
3 G D -3.4606
4 H D -3.9868
5 K D -3.7468
6 G D -3.0935
7 H D -3.2028
1 G E -2.9120
2 K E -3.3262
3 G E -3.4990
4 H E -3.7782
5 K E -4.3190
6 G E -3.4597
7 H E -4.7502
1 G F -2.9593
2 K F -3.4032
3 G F -3.9344
4 H F -4.6678
5 K F -4.3885
6 G F -3.8219
7 H F -3.8584
1 G G -3.2273
2 K G -3.6546
3 G G -3.5108
4 H G -3.6289
5 K G -3.9078
6 G G -3.2201
7 H G -3.6180
1 G H -2.4941
2 K H -3.2947
3 G H 0.0000
4 H H -3.3264
5 K H -3.3598
6 G H -2.5410
7 H H -2.6293
1 G I -2.2104
2 K I -2.9657
3 G I -3.1085
4 H I -3.2537
5 K I -3.0873
6 G I -2.1354
7 H I -1.8572
1 G J -2.2993
2 K J -3.1602
3 G J -3.0462
4 H J -3.8864
5 K J -4.1808
6 G J -3.1783
7 H J -3.9799
1 G K -3.2221
2 K K -4.0941
3 G K -4.3699
4 H K -4.2453
5 K K -4.6093
6 G K -3.3212
7 H K -3.0328
1 G L -2.7757
2 K L -3.3350
3 G L -3.9977
4 H L 0.0000
5 K L -3.4251
6 G L -2.4739
7 H L -2.6951
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Laboratory of Theory of Biopolymers 2018