| Chain sequence(s) |
A: GKGHKGH
C: GKGHKGH B: GKGHKGH E: GKGHKGH D: GKGHKGH G: GKGHKGH F: GKGHKGH I: GKGHKGH H: GKGHKGH K: GKGHKGH J: GKGHKGH L: GKGHKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:21)
[INFO] Main: Simulation completed successfully. (00:03:25)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -2.7400 | |
| 2 | K | A | -4.0139 | |
| 3 | G | A | -3.8581 | |
| 4 | H | A | -4.3762 | |
| 5 | K | A | -5.3064 | |
| 6 | G | A | -4.5746 | |
| 7 | H | A | -4.3739 | |
| 1 | G | B | -4.0738 | |
| 2 | K | B | -4.3257 | |
| 3 | G | B | 0.0000 | |
| 4 | H | B | -4.7201 | |
| 5 | K | B | -4.7145 | |
| 6 | G | B | -4.3762 | |
| 7 | H | B | -4.1498 | |
| 1 | G | C | -3.3009 | |
| 2 | K | C | -3.3723 | |
| 3 | G | C | -3.0723 | |
| 4 | H | C | -3.0559 | |
| 5 | K | C | -3.3991 | |
| 6 | G | C | -2.7209 | |
| 7 | H | C | -3.2980 | |
| 1 | G | D | -2.5811 | |
| 2 | K | D | -3.2372 | |
| 3 | G | D | -3.4606 | |
| 4 | H | D | -3.9868 | |
| 5 | K | D | -3.7468 | |
| 6 | G | D | -3.0935 | |
| 7 | H | D | -3.2028 | |
| 1 | G | E | -2.9120 | |
| 2 | K | E | -3.3262 | |
| 3 | G | E | -3.4990 | |
| 4 | H | E | -3.7782 | |
| 5 | K | E | -4.3190 | |
| 6 | G | E | -3.4597 | |
| 7 | H | E | -4.7502 | |
| 1 | G | F | -2.9593 | |
| 2 | K | F | -3.4032 | |
| 3 | G | F | -3.9344 | |
| 4 | H | F | -4.6678 | |
| 5 | K | F | -4.3885 | |
| 6 | G | F | -3.8219 | |
| 7 | H | F | -3.8584 | |
| 1 | G | G | -3.2273 | |
| 2 | K | G | -3.6546 | |
| 3 | G | G | -3.5108 | |
| 4 | H | G | -3.6289 | |
| 5 | K | G | -3.9078 | |
| 6 | G | G | -3.2201 | |
| 7 | H | G | -3.6180 | |
| 1 | G | H | -2.4941 | |
| 2 | K | H | -3.2947 | |
| 3 | G | H | 0.0000 | |
| 4 | H | H | -3.3264 | |
| 5 | K | H | -3.3598 | |
| 6 | G | H | -2.5410 | |
| 7 | H | H | -2.6293 | |
| 1 | G | I | -2.2104 | |
| 2 | K | I | -2.9657 | |
| 3 | G | I | -3.1085 | |
| 4 | H | I | -3.2537 | |
| 5 | K | I | -3.0873 | |
| 6 | G | I | -2.1354 | |
| 7 | H | I | -1.8572 | |
| 1 | G | J | -2.2993 | |
| 2 | K | J | -3.1602 | |
| 3 | G | J | -3.0462 | |
| 4 | H | J | -3.8864 | |
| 5 | K | J | -4.1808 | |
| 6 | G | J | -3.1783 | |
| 7 | H | J | -3.9799 | |
| 1 | G | K | -3.2221 | |
| 2 | K | K | -4.0941 | |
| 3 | G | K | -4.3699 | |
| 4 | H | K | -4.2453 | |
| 5 | K | K | -4.6093 | |
| 6 | G | K | -3.3212 | |
| 7 | H | K | -3.0328 | |
| 1 | G | L | -2.7757 | |
| 2 | K | L | -3.3350 | |
| 3 | G | L | -3.9977 | |
| 4 | H | L | 0.0000 | |
| 5 | K | L | -3.4251 | |
| 6 | G | L | -2.4739 | |
| 7 | H | L | -2.6951 |