Project name: query_structure

Status: done

Started: 2026-03-16 23:51:06
Settings
Chain sequence(s) A: LPRDTSRCVGYHGYCIRSKVCPKPFAAFGTCSWRQKTCCVDTTSDFHTCQDKGGHCVSPKIRCLEEQLGLCPLKRWTCCKEI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:06)
Show buried residues

Minimal score value
-2.7717
Maximal score value
1.3685
Average score
-0.825
Total score value
-67.6529

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.0259
2 P A -0.3462
3 R A -1.7369
4 D A 0.0000
5 T A 0.0000
6 S A -0.4286
7 R A -1.5406
8 C A 0.0000
9 V A 1.3685
10 G A 0.4915
11 Y A 1.0049
12 H A 0.4177
13 G A 0.0000
14 Y A 1.0622
15 C A 0.1454
16 I A -0.4869
17 R A -2.3432
18 S A -1.6180
19 K A -1.1680
20 V A 0.5896
21 C A -0.1210
22 P A -0.7900
23 K A -1.6921
24 P A -1.3590
25 F A -0.6595
26 A A -0.6627
27 A A -0.2718
28 F A 0.0000
29 G A -1.1203
30 T A -1.2174
31 C A -0.4781
32 S A -1.0254
33 W A -1.2575
34 R A -2.5175
35 Q A -2.4959
36 K A -2.4045
37 T A -1.3376
38 C A 0.0000
39 C A 0.0000
40 V A 0.0000
41 D A -1.3552
42 T A -1.1727
43 T A -1.0948
44 S A -1.3451
45 D A -2.1361
46 F A -1.0544
47 H A -1.5323
48 T A -1.6070
49 C A 0.0000
50 Q A -2.7717
51 D A -2.5825
52 K A -2.2165
53 G A -1.9486
54 G A -2.2530
55 H A -1.3019
56 C A -0.1765
57 V A 0.0000
58 S A -1.1351
59 P A -1.5869
60 K A -1.8267
61 I A -0.8718
62 R A -1.4568
63 C A -0.4628
64 L A 0.3342
65 E A -1.6425
66 E A -2.2028
67 Q A 0.0000
68 L A -1.0175
69 G A -0.3683
70 L A 0.7435
71 C A 0.0000
72 P A -0.0540
73 L A -0.2292
74 K A -1.8329
75 R A -2.1955
76 W A -1.1895
77 T A -0.8034
78 C A 0.0000
79 C A 0.0000
80 K A -1.6095
81 E A -1.5572
82 I A 0.8331
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Laboratory of Theory of Biopolymers 2018