| Chain sequence(s) |
A: QVQLVQSGSELKKPGASSVKVSCKASGYTFTQNNMDWVRQAPGQGLEWMGDINTRSGGVVIIYYNEEFQDRLIMMTVDKSSTDTAYMMELSSLRSSEDTATYHCARRKSYGYYLDVWGEGTLVTVSSASTTKGPSVFPLAPCSRTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYTCNVDHKPSNNTKVDKRVES
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:34)
[INFO] Main: Simulation completed successfully. (00:02:35)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4332 | |
| 2 | V | A | -0.5928 | |
| 3 | Q | A | -1.0237 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.6790 | |
| 6 | Q | A | -0.1839 | |
| 7 | S | A | -0.6861 | |
| 8 | G | A | -0.8066 | |
| 9 | S | A | 0.0000 | |
| 10 | E | A | -1.5321 | |
| 11 | L | A | -0.9924 | |
| 12 | K | A | -1.6599 | |
| 13 | K | A | -2.4348 | |
| 14 | P | A | -2.1876 | |
| 15 | G | A | -1.5561 | |
| 16 | A | A | -1.2231 | |
| 17 | S | A | -1.3288 | |
| 18 | V | A | 0.0000 | |
| 19 | K | A | -1.8815 | |
| 20 | V | A | 0.0000 | |
| 21 | S | A | -0.5338 | |
| 22 | C | A | 0.0000 | |
| 23 | K | A | -1.0869 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.8620 | |
| 26 | G | A | -0.9278 | |
| 27 | Y | A | -0.5128 | |
| 28 | T | A | -0.4024 | |
| 29 | F | A | 0.0000 | |
| 30 | T | A | -1.5372 | |
| 31 | Q | A | -1.1337 | |
| 32 | N | A | 0.0000 | |
| 33 | N | A | -0.7735 | |
| 34 | M | A | 0.0000 | |
| 35 | D | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | R | A | -0.3370 | |
| 39 | Q | A | -0.7353 | |
| 40 | A | A | -1.1212 | |
| 41 | P | A | -1.0501 | |
| 42 | G | A | -1.1970 | |
| 43 | Q | A | -1.6226 | |
| 44 | G | A | -0.7039 | |
| 45 | L | A | 0.5773 | |
| 46 | E | A | -0.1261 | |
| 47 | W | A | 0.3119 | |
| 48 | M | A | 0.0000 | |
| 49 | G | A | 0.0000 | |
| 50 | D | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | N | A | -1.0395 | |
| 53 | T | A | 0.0000 | |
| 54 | R | A | -2.6710 | |
| 55 | S | A | -1.5369 | |
| 56 | G | A | -1.3395 | |
| 57 | G | A | -0.3582 | |
| 58 | V | A | 0.9992 | |
| 59 | I | A | 1.5793 | |
| 60 | Y | A | 0.0133 | |
| 61 | N | A | -1.2896 | |
| 62 | E | A | -3.1061 | |
| 63 | E | A | -3.3338 | |
| 64 | F | A | 0.0000 | |
| 65 | Q | A | -2.4356 | |
| 66 | D | A | -2.7163 | |
| 67 | R | A | 0.0000 | |
| 68 | L | A | 0.0000 | |
| 69 | I | A | 0.6363 | |
| 70 | M | A | 0.0000 | |
| 71 | T | A | -0.0715 | |
| 72 | V | A | -1.2926 | |
| 73 | D | A | -2.0634 | |
| 74 | K | A | -2.7462 | |
| 75 | S | A | -1.4791 | |
| 76 | T | A | -1.4814 | |
| 77 | D | A | -1.9936 | |
| 78 | T | A | -1.2991 | |
| 79 | A | A | 0.0000 | |
| 80 | Y | A | -0.3880 | |
| 81 | M | A | 0.0000 | |
| 82 | E | A | -0.8876 | |
| 83 | L | A | 0.0000 | |
| 84 | S | A | -0.9486 | |
| 85 | S | A | -1.2439 | |
| 86 | L | A | 0.0000 | |
| 87 | R | A | -2.6683 | |
| 88 | S | A | -2.2192 | |
| 89 | E | A | -2.4122 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0476 | |
| 92 | A | A | 0.0000 | |
| 93 | T | A | -0.3199 | |
| 94 | Y | A | 0.0000 | |
| 95 | H | A | -0.2896 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | R | A | -0.2120 | |
| 99 | R | A | 0.0117 | |
| 100 | K | A | 0.0057 | |
| 101 | S | A | 0.2198 | |
| 102 | Y | A | 1.3299 | |
| 103 | G | A | 1.1710 | |
| 104 | Y | A | 1.8595 | |
| 105 | Y | A | 1.7489 | |
| 106 | L | A | 0.6220 | |
| 107 | D | A | -0.3005 | |
| 108 | V | A | -0.1024 | |
| 109 | W | A | 0.0308 | |
| 110 | G | A | 0.0000 | |
| 111 | E | A | -1.5254 | |
| 112 | G | A | -0.8319 | |
| 113 | T | A | 0.0000 | |
| 114 | L | A | -0.4121 | |
| 115 | V | A | 0.0000 | |
| 116 | T | A | -0.9575 | |
| 117 | V | A | 0.0000 | |
| 118 | S | A | -1.3913 | |
| 119 | S | A | -0.9534 | |
| 120 | A | A | -0.6064 | |
| 121 | S | A | -0.6937 | |
| 122 | T | A | -0.8916 | |
| 123 | K | A | -1.3638 | |
| 124 | G | A | -1.5912 | |
| 125 | P | A | 0.0000 | |
| 126 | S | A | -0.3501 | |
| 127 | V | A | 0.0000 | |
| 128 | F | A | 0.7033 | |
| 129 | P | A | 0.2087 | |
| 130 | L | A | 0.9206 | |
| 131 | A | A | 0.2782 | |
| 132 | P | A | -0.2188 | |
| 133 | C | A | 0.1794 | |
| 134 | S | A | -0.7872 | |
| 135 | R | A | -2.0427 | |
| 137 | T | A | -1.2256 | |
| 138 | S | A | -1.4807 | |
| 139 | E | A | -2.3413 | |
| 140 | S | A | -1.3223 | |
| 141 | T | A | -0.9287 | |
| 142 | A | A | -0.7494 | |
| 143 | A | A | 0.1133 | |
| 144 | L | A | 0.0000 | |
| 145 | G | A | 0.0000 | |
| 146 | C | A | 0.0000 | |
| 147 | L | A | 0.6248 | |
| 148 | V | A | 0.0000 | |
| 149 | K | A | -0.3306 | |
| 150 | D | A | -0.5427 | |
| 151 | Y | A | 0.0000 | |
| 152 | F | A | -0.2553 | |
| 153 | P | A | 0.0000 | |
| 154 | E | A | -0.4058 | |
| 155 | P | A | -0.6696 | |
| 156 | V | A | -0.5696 | |
| 157 | T | A | -0.4998 | |
| 158 | V | A | -0.1372 | |
| 159 | S | A | -0.5377 | |
| 160 | W | A | 0.0000 | |
| 161 | N | A | -1.0458 | |
| 162 | S | A | -0.7476 | |
| 163 | G | A | -0.5307 | |
| 164 | A | A | -0.2333 | |
| 165 | L | A | -0.0694 | |
| 166 | T | A | -0.2787 | |
| 167 | S | A | -0.3285 | |
| 168 | G | A | -0.4074 | |
| 169 | V | A | 0.0006 | |
| 170 | H | A | -0.5156 | |
| 171 | T | A | 0.2000 | |
| 172 | F | A | 1.0717 | |
| 173 | P | A | 0.7766 | |
| 174 | A | A | 1.3270 | |
| 175 | V | A | 2.4541 | |
| 176 | L | A | 2.0969 | |
| 177 | Q | A | 0.6010 | |
| 178 | S | A | 0.0057 | |
| 179 | S | A | -0.2949 | |
| 180 | G | A | -0.0564 | |
| 181 | L | A | 0.2329 | |
| 182 | Y | A | 0.8025 | |
| 183 | S | A | 0.7182 | |
| 184 | L | A | 0.0000 | |
| 185 | S | A | 0.6551 | |
| 186 | S | A | 0.0000 | |
| 187 | V | A | 0.3785 | |
| 188 | V | A | 0.0000 | |
| 189 | T | A | -0.2289 | |
| 190 | V | A | 0.0000 | |
| 191 | P | A | -0.6661 | |
| 192 | S | A | -0.7832 | |
| 193 | S | A | -0.6782 | |
| 194 | S | A | -0.4501 | |
| 195 | L | A | -0.4151 | |
| 196 | G | A | -0.7419 | |
| 197 | T | A | -0.6668 | |
| 198 | Q | A | -0.9479 | |
| 199 | T | A | -1.0318 | |
| 200 | Y | A | 0.0000 | |
| 201 | T | A | -1.7769 | |
| 202 | C | A | 0.0000 | |
| 203 | N | A | -1.6901 | |
| 204 | V | A | 0.0000 | |
| 205 | D | A | -1.8148 | |
| 206 | H | A | 0.0000 | |
| 207 | K | A | -2.8305 | |
| 208 | P | A | -1.8004 | |
| 209 | S | A | -1.9147 | |
| 210 | N | A | -2.6676 | |
| 211 | T | A | -2.0922 | |
| 212 | K | A | -2.6584 | |
| 213 | V | A | -1.6084 | |
| 214 | D | A | -2.8250 | |
| 215 | K | A | -2.2247 | |
| 216 | R | A | -2.6126 | |
| 217 | V | A | -1.1319 | |
| 218 | E | A | -1.2095 | |
| 219 | S | A | -1.0445 |