Project name: 28a947b5236e4d2

Status: done

Started: 2025-11-12 05:38:29
Settings
Chain sequence(s) A: QVQLVQSGSELKKPGASSVKVSCKASGYTFTQNNMDWVRQAPGQGLEWMGDINTRSGGVVIIYYNEEFQDRLIMMTVDKSSTDTAYMMELSSLRSSEDTATYHCARRKSYGYYLDVWGEGTLVTVSSASTTKGPSVFPLAPCSRTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYTCNVDHKPSNNTKVDKRVES
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:35)
Show buried residues

Minimal score value
-3.3338
Maximal score value
2.4541
Average score
-0.5641
Total score value
-122.9683

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4332
2 V A -0.5928
3 Q A -1.0237
4 L A 0.0000
5 V A 0.6790
6 Q A -0.1839
7 S A -0.6861
8 G A -0.8066
9 S A 0.0000
10 E A -1.5321
11 L A -0.9924
12 K A -1.6599
13 K A -2.4348
14 P A -2.1876
15 G A -1.5561
16 A A -1.2231
17 S A -1.3288
18 V A 0.0000
19 K A -1.8815
20 V A 0.0000
21 S A -0.5338
22 C A 0.0000
23 K A -1.0869
24 A A 0.0000
25 S A -0.8620
26 G A -0.9278
27 Y A -0.5128
28 T A -0.4024
29 F A 0.0000
30 T A -1.5372
31 Q A -1.1337
32 N A 0.0000
33 N A -0.7735
34 M A 0.0000
35 D A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A -0.3370
39 Q A -0.7353
40 A A -1.1212
41 P A -1.0501
42 G A -1.1970
43 Q A -1.6226
44 G A -0.7039
45 L A 0.5773
46 E A -0.1261
47 W A 0.3119
48 M A 0.0000
49 G A 0.0000
50 D A 0.0000
51 I A 0.0000
52 N A -1.0395
53 T A 0.0000
54 R A -2.6710
55 S A -1.5369
56 G A -1.3395
57 G A -0.3582
58 V A 0.9992
59 I A 1.5793
60 Y A 0.0133
61 N A -1.2896
62 E A -3.1061
63 E A -3.3338
64 F A 0.0000
65 Q A -2.4356
66 D A -2.7163
67 R A 0.0000
68 L A 0.0000
69 I A 0.6363
70 M A 0.0000
71 T A -0.0715
72 V A -1.2926
73 D A -2.0634
74 K A -2.7462
75 S A -1.4791
76 T A -1.4814
77 D A -1.9936
78 T A -1.2991
79 A A 0.0000
80 Y A -0.3880
81 M A 0.0000
82 E A -0.8876
83 L A 0.0000
84 S A -0.9486
85 S A -1.2439
86 L A 0.0000
87 R A -2.6683
88 S A -2.2192
89 E A -2.4122
90 D A 0.0000
91 T A -1.0476
92 A A 0.0000
93 T A -0.3199
94 Y A 0.0000
95 H A -0.2896
96 C A 0.0000
97 A A 0.0000
98 R A -0.2120
99 R A 0.0117
100 K A 0.0057
101 S A 0.2198
102 Y A 1.3299
103 G A 1.1710
104 Y A 1.8595
105 Y A 1.7489
106 L A 0.6220
107 D A -0.3005
108 V A -0.1024
109 W A 0.0308
110 G A 0.0000
111 E A -1.5254
112 G A -0.8319
113 T A 0.0000
114 L A -0.4121
115 V A 0.0000
116 T A -0.9575
117 V A 0.0000
118 S A -1.3913
119 S A -0.9534
120 A A -0.6064
121 S A -0.6937
122 T A -0.8916
123 K A -1.3638
124 G A -1.5912
125 P A 0.0000
126 S A -0.3501
127 V A 0.0000
128 F A 0.7033
129 P A 0.2087
130 L A 0.9206
131 A A 0.2782
132 P A -0.2188
133 C A 0.1794
134 S A -0.7872
135 R A -2.0427
137 T A -1.2256
138 S A -1.4807
139 E A -2.3413
140 S A -1.3223
141 T A -0.9287
142 A A -0.7494
143 A A 0.1133
144 L A 0.0000
145 G A 0.0000
146 C A 0.0000
147 L A 0.6248
148 V A 0.0000
149 K A -0.3306
150 D A -0.5427
151 Y A 0.0000
152 F A -0.2553
153 P A 0.0000
154 E A -0.4058
155 P A -0.6696
156 V A -0.5696
157 T A -0.4998
158 V A -0.1372
159 S A -0.5377
160 W A 0.0000
161 N A -1.0458
162 S A -0.7476
163 G A -0.5307
164 A A -0.2333
165 L A -0.0694
166 T A -0.2787
167 S A -0.3285
168 G A -0.4074
169 V A 0.0006
170 H A -0.5156
171 T A 0.2000
172 F A 1.0717
173 P A 0.7766
174 A A 1.3270
175 V A 2.4541
176 L A 2.0969
177 Q A 0.6010
178 S A 0.0057
179 S A -0.2949
180 G A -0.0564
181 L A 0.2329
182 Y A 0.8025
183 S A 0.7182
184 L A 0.0000
185 S A 0.6551
186 S A 0.0000
187 V A 0.3785
188 V A 0.0000
189 T A -0.2289
190 V A 0.0000
191 P A -0.6661
192 S A -0.7832
193 S A -0.6782
194 S A -0.4501
195 L A -0.4151
196 G A -0.7419
197 T A -0.6668
198 Q A -0.9479
199 T A -1.0318
200 Y A 0.0000
201 T A -1.7769
202 C A 0.0000
203 N A -1.6901
204 V A 0.0000
205 D A -1.8148
206 H A 0.0000
207 K A -2.8305
208 P A -1.8004
209 S A -1.9147
210 N A -2.6676
211 T A -2.0922
212 K A -2.6584
213 V A -1.6084
214 D A -2.8250
215 K A -2.2247
216 R A -2.6126
217 V A -1.1319
218 E A -1.2095
219 S A -1.0445
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018