| Chain sequence(s) |
A: LPNITILATGGTIAGGGDSATKSNYTAGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDDVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKTVFDTLATAAKNGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQYD
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:09)
[INFO] Main: Simulation completed successfully. (00:02:11)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | L | A | 1.5358 | |
| 2 | P | A | 0.1905 | |
| 3 | N | A | -0.2909 | |
| 4 | I | A | 0.0000 | |
| 5 | T | A | -0.1955 | |
| 6 | I | A | 0.0000 | |
| 7 | L | A | 0.0000 | |
| 8 | A | A | 0.0000 | |
| 9 | T | A | 0.0000 | |
| 10 | G | A | 0.0000 | |
| 11 | G | A | 0.0000 | |
| 12 | T | A | 0.0000 | |
| 13 | I | A | 0.0000 | |
| 14 | A | A | 0.0000 | |
| 15 | G | A | 0.0000 | |
| 16 | G | A | -0.0793 | |
| 17 | G | A | -0.3935 | |
| 18 | D | A | -1.8260 | |
| 19 | S | A | -0.3560 | |
| 20 | A | A | 0.1176 | |
| 21 | T | A | -0.3686 | |
| 22 | K | A | -1.7497 | |
| 23 | S | A | -0.7321 | |
| 24 | N | A | -1.2066 | |
| 25 | Y | A | 0.3029 | |
| 26 | T | A | 0.0348 | |
| 27 | A | A | -0.0137 | |
| 28 | G | A | -0.3843 | |
| 29 | K | A | -1.6730 | |
| 30 | V | A | -0.1019 | |
| 31 | G | A | -0.0593 | |
| 32 | V | A | 0.0000 | |
| 33 | E | A | -2.0459 | |
| 34 | N | A | -1.5962 | |
| 35 | L | A | 0.0000 | |
| 36 | V | A | 0.0000 | |
| 37 | N | A | -1.2626 | |
| 38 | A | A | -0.1679 | |
| 39 | V | A | 0.0000 | |
| 40 | P | A | -0.4671 | |
| 41 | Q | A | -1.2435 | |
| 42 | L | A | 0.0000 | |
| 43 | K | A | -2.0223 | |
| 44 | D | A | -2.0306 | |
| 45 | I | A | 0.0308 | |
| 46 | A | A | 0.0000 | |
| 47 | N | A | -1.1209 | |
| 48 | V | A | -0.2849 | |
| 49 | K | A | -1.7186 | |
| 50 | G | A | -0.9568 | |
| 51 | E | A | -1.8698 | |
| 52 | Q | A | -0.6069 | |
| 53 | V | A | 0.3570 | |
| 54 | V | A | 0.4046 | |
| 55 | N | A | -0.3519 | |
| 56 | I | A | 0.2045 | |
| 57 | G | A | -0.0593 | |
| 58 | S | A | 0.0000 | |
| 59 | Q | A | -1.5170 | |
| 60 | D | A | -1.9802 | |
| 61 | M | A | -0.3407 | |
| 62 | N | A | -0.8290 | |
| 63 | D | A | -0.8327 | |
| 64 | D | A | -1.8556 | |
| 65 | V | A | 0.0000 | |
| 66 | W | A | 0.0000 | |
| 67 | L | A | 0.0000 | |
| 68 | T | A | -0.0273 | |
| 69 | L | A | 0.0000 | |
| 70 | A | A | 0.0000 | |
| 71 | K | A | -0.6576 | |
| 72 | K | A | -0.7519 | |
| 73 | I | A | 0.0000 | |
| 74 | N | A | -0.3445 | |
| 75 | T | A | -0.2727 | |
| 76 | D | A | -0.7912 | |
| 77 | C | A | -0.3568 | |
| 78 | D | A | -2.0664 | |
| 79 | K | A | -2.0124 | |
| 80 | T | A | 0.0000 | |
| 81 | D | A | -1.3022 | |
| 82 | G | A | 0.0000 | |
| 83 | F | A | 0.0000 | |
| 84 | V | A | 0.0000 | |
| 85 | I | A | 0.0000 | |
| 86 | T | A | 0.0000 | |
| 87 | H | A | 0.0000 | |
| 88 | G | A | 0.0000 | |
| 89 | T | A | 0.0000 | |
| 90 | D | A | -0.5146 | |
| 91 | T | A | -0.1039 | |
| 92 | M | A | 0.0000 | |
| 93 | E | A | 0.0000 | |
| 94 | E | A | -0.2019 | |
| 95 | T | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | Y | A | 0.0000 | |
| 98 | F | A | 0.0000 | |
| 99 | L | A | 0.0000 | |
| 100 | D | A | 0.0000 | |
| 101 | L | A | 0.0000 | |
| 102 | T | A | 0.0000 | |
| 103 | V | A | 0.0000 | |
| 104 | K | A | -0.5427 | |
| 105 | C | A | 0.0000 | |
| 106 | D | A | -0.5550 | |
| 107 | K | A | -0.6161 | |
| 108 | P | A | 0.0000 | |
| 109 | V | A | 0.0000 | |
| 110 | V | A | 0.0000 | |
| 111 | M | A | 0.0000 | |
| 112 | V | A | 0.0000 | |
| 113 | G | A | 0.0000 | |
| 114 | A | A | 0.0000 | |
| 115 | M | A | 0.0000 | |
| 116 | R | A | -0.8138 | |
| 117 | P | A | 0.0000 | |
| 118 | S | A | -0.0947 | |
| 119 | T | A | -0.0564 | |
| 120 | S | A | 0.1593 | |
| 121 | M | A | 1.0115 | |
| 122 | S | A | -0.0236 | |
| 123 | A | A | -0.0657 | |
| 124 | D | A | -0.2157 | |
| 125 | G | A | 0.0000 | |
| 126 | P | A | 0.2309 | |
| 127 | F | A | 1.9459 | |
| 128 | N | A | 0.0000 | |
| 129 | L | A | 0.0000 | |
| 130 | Y | A | 0.4597 | |
| 131 | N | A | 0.0000 | |
| 132 | A | A | 0.0000 | |
| 133 | V | A | 0.0000 | |
| 134 | V | A | 0.0000 | |
| 135 | T | A | 0.0000 | |
| 136 | A | A | 0.0000 | |
| 137 | A | A | -0.0620 | |
| 138 | D | A | -0.7454 | |
| 139 | K | A | -1.7766 | |
| 140 | A | A | -0.2911 | |
| 141 | S | A | 0.0000 | |
| 142 | A | A | -0.2126 | |
| 143 | N | A | -1.3160 | |
| 144 | R | A | -0.4916 | |
| 145 | G | A | -0.0932 | |
| 146 | V | A | 0.0000 | |
| 147 | L | A | 0.0000 | |
| 148 | V | A | 0.0000 | |
| 149 | V | A | 0.0000 | |
| 150 | M | A | 0.0000 | |
| 151 | N | A | -1.0188 | |
| 152 | D | A | -0.9164 | |
| 153 | T | A | 0.0178 | |
| 154 | V | A | 0.0000 | |
| 155 | L | A | 0.0000 | |
| 156 | D | A | 0.0000 | |
| 157 | G | A | 0.0000 | |
| 158 | R | A | 0.0000 | |
| 159 | D | A | 0.0000 | |
| 160 | V | A | 0.0000 | |
| 161 | T | A | 0.0000 | |
| 162 | K | A | -0.3062 | |
| 163 | T | A | -0.2612 | |
| 164 | N | A | -0.8789 | |
| 165 | T | A | -0.2362 | |
| 166 | T | A | -0.2699 | |
| 167 | D | A | -0.9644 | |
| 168 | V | A | 0.2263 | |
| 169 | A | A | 0.0845 | |
| 170 | T | A | 0.0000 | |
| 171 | F | A | 0.0000 | |
| 172 | K | A | -1.2436 | |
| 173 | S | A | 0.0000 | |
| 174 | V | A | 0.4029 | |
| 175 | N | A | -0.0643 | |
| 176 | Y | A | 1.2285 | |
| 177 | G | A | 0.1454 | |
| 178 | P | A | -0.0741 | |
| 179 | L | A | 0.0000 | |
| 180 | G | A | 0.0000 | |
| 181 | Y | A | 1.3142 | |
| 182 | I | A | 0.0000 | |
| 183 | H | A | -1.2202 | |
| 184 | N | A | -1.4963 | |
| 185 | G | A | -0.7793 | |
| 186 | K | A | -1.7001 | |
| 187 | I | A | -0.3868 | |
| 188 | D | A | -1.7139 | |
| 189 | Y | A | -0.3758 | |
| 190 | Q | A | -1.4981 | |
| 191 | R | A | -2.0710 | |
| 192 | T | A | -0.4052 | |
| 193 | P | A | -0.0375 | |
| 194 | A | A | -0.0690 | |
| 195 | R | A | -0.8508 | |
| 196 | K | A | -1.1562 | |
| 197 | H | A | -0.3132 | |
| 198 | T | A | 0.0000 | |
| 199 | S | A | -0.5847 | |
| 200 | D | A | -1.8242 | |
| 201 | T | A | 0.0000 | |
| 202 | P | A | -0.2226 | |
| 203 | F | A | 0.0000 | |
| 204 | D | A | -1.2687 | |
| 205 | V | A | 0.0000 | |
| 206 | S | A | -0.5120 | |
| 207 | K | A | -1.7055 | |
| 208 | L | A | -0.3412 | |
| 209 | N | A | -1.5705 | |
| 210 | E | A | -2.0512 | |
| 211 | L | A | 0.0000 | |
| 212 | P | A | -0.3522 | |
| 213 | K | A | -1.7069 | |
| 214 | V | A | 0.0000 | |
| 215 | G | A | 0.0638 | |
| 216 | I | A | 0.6202 | |
| 217 | V | A | 0.0000 | |
| 218 | Y | A | 1.3153 | |
| 219 | N | A | 0.0000 | |
| 220 | Y | A | 0.8423 | |
| 221 | A | A | -0.0164 | |
| 222 | N | A | -1.2625 | |
| 223 | A | A | 0.0000 | |
| 224 | S | A | -0.2087 | |
| 225 | D | A | -0.1040 | |
| 226 | L | A | 1.3630 | |
| 227 | P | A | 0.1652 | |
| 228 | A | A | 0.0000 | |
| 229 | K | A | -0.8129 | |
| 230 | A | A | -0.0984 | |
| 231 | L | A | 0.3360 | |
| 232 | V | A | 0.2138 | |
| 233 | D | A | -1.6941 | |
| 234 | A | A | -0.3390 | |
| 235 | G | A | -0.4143 | |
| 236 | Y | A | -0.0436 | |
| 237 | D | A | -0.9992 | |
| 238 | G | A | 0.0000 | |
| 239 | I | A | 0.0000 | |
| 240 | V | A | 0.0000 | |
| 241 | S | A | 0.0000 | |
| 242 | A | A | 0.0000 | |
| 243 | G | A | 0.0000 | |
| 244 | V | A | 0.5183 | |
| 245 | G | A | -0.4435 | |
| 246 | N | A | -0.5929 | |
| 247 | G | A | 0.0000 | |
| 248 | N | A | -0.4657 | |
| 249 | L | A | 0.0000 | |
| 250 | Y | A | -0.0414 | |
| 251 | K | A | -1.6595 | |
| 252 | T | A | -0.3247 | |
| 253 | V | A | 0.0000 | |
| 254 | F | A | 0.0097 | |
| 255 | D | A | -1.7309 | |
| 256 | T | A | 0.0000 | |
| 257 | L | A | 0.0000 | |
| 258 | A | A | 0.0000 | |
| 259 | T | A | -0.0659 | |
| 260 | A | A | 0.0000 | |
| 261 | A | A | -0.2950 | |
| 262 | K | A | -1.9223 | |
| 263 | N | A | -1.6549 | |
| 264 | G | A | -0.6946 | |
| 265 | T | A | -0.0889 | |
| 266 | A | A | 0.0042 | |
| 267 | V | A | 0.0000 | |
| 268 | V | A | 0.0000 | |
| 269 | R | A | 0.0000 | |
| 270 | S | A | 0.0000 | |
| 271 | S | A | 0.0000 | |
| 272 | R | A | -1.4850 | |
| 273 | V | A | 0.5453 | |
| 274 | P | A | -0.1052 | |
| 275 | T | A | -0.1792 | |
| 276 | G | A | -0.4631 | |
| 277 | A | A | -0.0805 | |
| 278 | T | A | 0.0000 | |
| 279 | T | A | -0.1521 | |
| 280 | Q | A | -0.9822 | |
| 281 | D | A | -1.9024 | |
| 282 | A | A | -0.6200 | |
| 283 | E | A | -1.8153 | |
| 284 | V | A | 0.0000 | |
| 285 | D | A | -1.7894 | |
| 286 | D | A | 0.0000 | |
| 287 | A | A | -0.2482 | |
| 288 | K | A | -1.6440 | |
| 289 | Y | A | -0.0553 | |
| 290 | G | A | -0.0722 | |
| 291 | F | A | 0.0000 | |
| 292 | V | A | 0.0000 | |
| 293 | A | A | 0.0000 | |
| 294 | S | A | 0.0000 | |
| 295 | G | A | -0.1234 | |
| 296 | T | A | -0.0289 | |
| 297 | L | A | 0.0000 | |
| 298 | N | A | -0.1704 | |
| 299 | P | A | 0.0000 | |
| 300 | Q | A | -0.3432 | |
| 301 | K | A | 0.0000 | |
| 302 | A | A | 0.0000 | |
| 303 | R | A | -0.2782 | |
| 304 | V | A | 0.0000 | |
| 305 | L | A | 0.0000 | |
| 306 | L | A | 0.0000 | |
| 307 | Q | A | 0.0000 | |
| 308 | L | A | 0.0000 | |
| 309 | A | A | 0.0000 | |
| 310 | L | A | 0.0000 | |
| 311 | T | A | -0.1827 | |
| 312 | Q | A | -0.9058 | |
| 313 | T | A | -0.4792 | |
| 314 | K | A | -1.8357 | |
| 315 | D | A | -1.0604 | |
| 316 | P | A | -0.4434 | |
| 317 | Q | A | -1.3289 | |
| 318 | Q | A | -0.9529 | |
| 319 | I | A | 0.0000 | |
| 320 | Q | A | -0.3428 | |
| 321 | Q | A | -1.1763 | |
| 322 | I | A | 0.0000 | |
| 323 | F | A | 0.0000 | |
| 324 | N | A | -1.3858 | |
| 325 | Q | A | -0.8258 | |
| 326 | Y | A | 0.0316 | |
| 401 | D | A | -0.2347 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine