Project name: SGHKGHK20

Status: done

Started: 2026-05-21 14:45:11
Settings
Chain sequence(s) A: SGHKGHK
C: SGHKGHK
B: SGHKGHK
E: SGHKGHK
D: SGHKGHK
G: SGHKGHK
F: SGHKGHK
I: SGHKGHK
H: SGHKGHK
K: SGHKGHK
J: SGHKGHK
M: SGHKGHK
L: SGHKGHK
O: SGHKGHK
N: SGHKGHK
Q: SGHKGHK
P: SGHKGHK
S: SGHKGHK
R: SGHKGHK
T: SGHKGHK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:50)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:54)
Show buried residues

Minimal score value
-4.7868
Maximal score value
0.0
Average score
-2.8818
Total score value
-403.4575

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -2.6627
2 G A -2.2009
3 H A -3.5565
4 K A -3.2963
5 G A -3.0792
6 H A -2.7964
7 K A -2.8702
1 S B -2.8549
2 G B 0.0000
3 H B -2.4345
4 K B -2.8525
5 G B -2.2455
6 H B -2.3380
7 K B -2.8713
1 S C -1.3513
2 G C -2.3005
3 H C -2.5784
4 K C -3.0220
5 G C -2.3820
6 H C -3.0950
7 K C -3.5269
1 S D 0.0000
2 G D -2.7290
3 H D -3.1119
4 K D -3.6402
5 G D -3.3686
6 H D -3.0000
7 K D -2.6693
1 S E -1.0578
2 G E -2.2854
3 H E -2.6859
4 K E -3.2975
5 G E -2.5538
6 H E -2.9284
7 K E -2.7327
1 S F -3.3260
2 G F -3.8771
3 H F -3.9430
4 K F -4.2847
5 G F -3.3970
6 H F -2.8344
7 K F -2.6576
1 S G -1.3472
2 G G -2.3634
3 H G -2.9832
4 K G -3.8868
5 G G -3.5182
6 H G -3.7671
7 K G -3.0901
1 S H -2.7485
2 G H -3.2864
3 H H -3.1398
4 K H -3.9699
5 G H -3.3277
6 H H -2.8319
7 K H -2.6346
1 S I -0.9658
2 G I -1.9798
3 H I -2.7355
4 K I -3.7917
5 G I -3.1118
6 H I -3.0344
7 K I -3.2969
1 S J -2.7232
2 G J -2.1726
3 H J -3.2609
4 K J -3.7459
5 G J -2.8249
6 H J -3.2682
7 K J -2.9039
1 S K -1.7654
2 G K -1.6887
3 H K -2.4761
4 K K -3.4823
5 G K -3.0362
6 H K -3.0100
7 K K -2.7244
1 S L -2.6217
2 G L -2.3184
3 H L -2.8798
4 K L -3.7222
5 G L -3.1674
6 H L -2.9154
7 K L -2.6396
1 S M -3.0751
2 G M -3.3422
3 H M -3.2868
4 K M -3.5664
5 G M -3.2603
6 H M -3.0058
7 K M -3.0485
1 S N -2.4619
2 G N -2.9519
3 H N -2.7067
4 K N -3.7575
5 G N -2.7529
6 H N -2.8822
7 K N -3.4107
1 S O -3.2524
2 G O -2.7300
3 H O -3.4693
4 K O -3.7812
5 G O -3.5472
6 H O -3.9791
7 K O -4.5683
1 S P -3.0952
2 G P -2.9955
3 H P -3.8278
4 K P -4.7868
5 G P -3.7109
6 H P -3.5082
7 K P -3.3005
1 S Q -0.9784
2 G Q -1.8018
3 H Q -3.0207
4 K Q -3.7332
5 G Q -2.7400
6 H Q -3.0334
7 K Q -2.6819
1 S R -1.7077
2 G R -2.2828
3 H R -2.9810
4 K R -3.3555
5 G R -3.1229
6 H R -2.8630
7 K R -2.8621
1 S S -2.1071
2 G S -2.2662
3 H S -2.4004
4 K S -3.2639
5 G S -2.6553
6 H S -2.6977
7 K S -2.6791
1 S T -1.8568
2 G T -1.9851
3 H T -2.8745
4 K T -3.2264
5 G T -2.7863
6 H T -2.9387
7 K T -2.6411
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Laboratory of Theory of Biopolymers 2018