Project name: GHKGHKG20

Status: done

Started: 2026-02-20 13:35:24
Settings
Chain sequence(s) A: GHKGHKG
C: GHKGHKG
B: GHKGHKG
E: GHKGHKG
D: GHKGHKG
G: GHKGHKG
F: GHKGHKG
I: GHKGHKG
H: GHKGHKG
K: GHKGHKG
J: GHKGHKG
M: GHKGHKG
L: GHKGHKG
O: GHKGHKG
N: GHKGHKG
Q: GHKGHKG
P: GHKGHKG
S: GHKGHKG
R: GHKGHKG
T: GHKGHKG
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:12)
Show buried residues

Minimal score value
-5.3924
Maximal score value
0.0
Average score
-3.0318
Total score value
-424.454

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.5209
2 H A -3.2806
3 K A -3.6725
4 G A -3.4493
5 H A -3.2208
6 K A -3.6173
7 G A -2.4805
1 G B -3.7804
2 H B -3.2691
3 K B -4.1513
4 G B -3.6403
5 H B -3.2558
6 K B -3.3646
7 G B -2.2646
1 G C -3.6463
2 H C -4.4283
3 K C -4.0750
4 G C -3.0066
5 H C -3.2570
6 K C -2.7618
7 G C -1.9504
1 G D -3.1887
2 H D -3.2597
3 K D -4.0361
4 G D -4.0062
5 H D -3.7972
6 K D -4.4832
7 G D -2.9631
1 G E -2.3481
2 H E -2.5734
3 K E -3.7943
4 G E -3.2509
5 H E -3.0317
6 K E -3.3872
7 G E -2.7015
1 G F -3.3569
2 H F -3.5087
3 K F -3.8128
4 G F -3.4854
5 H F -3.2867
6 K F -3.3943
7 G F -2.5078
1 G G -2.7619
2 H G -2.9970
3 K G -3.3091
4 G G -3.2862
5 H G -3.6401
6 K G -3.8010
7 G G -2.9525
1 G H -2.2524
2 H H -3.5586
3 K H -4.4469
4 G H -4.0438
5 H H -3.9926
6 K H -3.3831
7 G H -2.5393
1 G I -3.4618
2 H I -4.3185
3 K I -4.7159
4 G I -3.5467
5 H I -3.7040
6 K I -2.8480
7 G I -2.2056
1 G J -2.6219
2 H J -2.5362
3 K J -3.2094
4 G J -2.6935
5 H J -2.9752
6 K J -2.8568
7 G J -1.6994
1 G K -1.9304
2 H K -2.9348
3 K K -3.3681
4 G K -2.6196
5 H K -2.6139
6 K K -2.5987
7 G K -1.6843
1 G L -2.5841
2 H L -3.1772
3 K L -3.3803
4 G L -2.6817
5 H L -2.7363
6 K L -2.4786
7 G L -1.9883
1 G M -3.1882
2 H M -3.3658
3 K M -3.2668
4 G M -2.4247
5 H M -2.4325
6 K M -2.3356
7 G M -1.7052
1 G N -2.0824
2 H N -2.7861
3 K N -3.3824
4 G N -3.1920
5 H N -3.2072
6 K N -3.0290
7 G N -1.7966
1 G O 0.0000
2 H O -3.0952
3 K O -3.5263
4 G O -2.9088
5 H O -2.7311
6 K O -2.7978
7 G O -1.7004
1 G P -2.3902
2 H P -2.5536
3 K P -2.8935
4 G P -2.4739
5 H P -3.4149
6 K P -3.2655
7 G P -2.8808
1 G Q -2.5801
2 H Q 0.0000
3 K Q -3.2908
4 G Q 0.0000
5 H Q -3.5405
6 K Q -3.5375
7 G Q -2.8789
1 G R -2.4643
2 H R -2.4940
3 K R 0.0000
4 G R -2.5383
5 H R -2.7224
6 K R -2.4866
7 G R -1.6851
1 G S -3.1054
2 H S -4.3942
3 K S -5.3924
4 G S -3.9844
5 H S -3.8716
6 K S -3.7854
7 G S -2.5330
1 G T -3.8829
2 H T -4.4160
3 K T -5.0905
4 G T -3.8408
5 H T -3.6197
6 K T -3.2341
7 G T -1.8576
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018