| Chain sequence(s) |
A: GHKGHKG
C: GHKGHKG B: GHKGHKG E: GHKGHKG D: GHKGHKG G: GHKGHKG F: GHKGHKG I: GHKGHKG H: GHKGHKG K: GHKGHKG J: GHKGHKG M: GHKGHKG L: GHKGHKG O: GHKGHKG N: GHKGHKG Q: GHKGHKG P: GHKGHKG S: GHKGHKG R: GHKGHKG T: GHKGHKG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:07:07)
[INFO] Main: Simulation completed successfully. (00:07:12)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -2.5209 | |
| 2 | H | A | -3.2806 | |
| 3 | K | A | -3.6725 | |
| 4 | G | A | -3.4493 | |
| 5 | H | A | -3.2208 | |
| 6 | K | A | -3.6173 | |
| 7 | G | A | -2.4805 | |
| 1 | G | B | -3.7804 | |
| 2 | H | B | -3.2691 | |
| 3 | K | B | -4.1513 | |
| 4 | G | B | -3.6403 | |
| 5 | H | B | -3.2558 | |
| 6 | K | B | -3.3646 | |
| 7 | G | B | -2.2646 | |
| 1 | G | C | -3.6463 | |
| 2 | H | C | -4.4283 | |
| 3 | K | C | -4.0750 | |
| 4 | G | C | -3.0066 | |
| 5 | H | C | -3.2570 | |
| 6 | K | C | -2.7618 | |
| 7 | G | C | -1.9504 | |
| 1 | G | D | -3.1887 | |
| 2 | H | D | -3.2597 | |
| 3 | K | D | -4.0361 | |
| 4 | G | D | -4.0062 | |
| 5 | H | D | -3.7972 | |
| 6 | K | D | -4.4832 | |
| 7 | G | D | -2.9631 | |
| 1 | G | E | -2.3481 | |
| 2 | H | E | -2.5734 | |
| 3 | K | E | -3.7943 | |
| 4 | G | E | -3.2509 | |
| 5 | H | E | -3.0317 | |
| 6 | K | E | -3.3872 | |
| 7 | G | E | -2.7015 | |
| 1 | G | F | -3.3569 | |
| 2 | H | F | -3.5087 | |
| 3 | K | F | -3.8128 | |
| 4 | G | F | -3.4854 | |
| 5 | H | F | -3.2867 | |
| 6 | K | F | -3.3943 | |
| 7 | G | F | -2.5078 | |
| 1 | G | G | -2.7619 | |
| 2 | H | G | -2.9970 | |
| 3 | K | G | -3.3091 | |
| 4 | G | G | -3.2862 | |
| 5 | H | G | -3.6401 | |
| 6 | K | G | -3.8010 | |
| 7 | G | G | -2.9525 | |
| 1 | G | H | -2.2524 | |
| 2 | H | H | -3.5586 | |
| 3 | K | H | -4.4469 | |
| 4 | G | H | -4.0438 | |
| 5 | H | H | -3.9926 | |
| 6 | K | H | -3.3831 | |
| 7 | G | H | -2.5393 | |
| 1 | G | I | -3.4618 | |
| 2 | H | I | -4.3185 | |
| 3 | K | I | -4.7159 | |
| 4 | G | I | -3.5467 | |
| 5 | H | I | -3.7040 | |
| 6 | K | I | -2.8480 | |
| 7 | G | I | -2.2056 | |
| 1 | G | J | -2.6219 | |
| 2 | H | J | -2.5362 | |
| 3 | K | J | -3.2094 | |
| 4 | G | J | -2.6935 | |
| 5 | H | J | -2.9752 | |
| 6 | K | J | -2.8568 | |
| 7 | G | J | -1.6994 | |
| 1 | G | K | -1.9304 | |
| 2 | H | K | -2.9348 | |
| 3 | K | K | -3.3681 | |
| 4 | G | K | -2.6196 | |
| 5 | H | K | -2.6139 | |
| 6 | K | K | -2.5987 | |
| 7 | G | K | -1.6843 | |
| 1 | G | L | -2.5841 | |
| 2 | H | L | -3.1772 | |
| 3 | K | L | -3.3803 | |
| 4 | G | L | -2.6817 | |
| 5 | H | L | -2.7363 | |
| 6 | K | L | -2.4786 | |
| 7 | G | L | -1.9883 | |
| 1 | G | M | -3.1882 | |
| 2 | H | M | -3.3658 | |
| 3 | K | M | -3.2668 | |
| 4 | G | M | -2.4247 | |
| 5 | H | M | -2.4325 | |
| 6 | K | M | -2.3356 | |
| 7 | G | M | -1.7052 | |
| 1 | G | N | -2.0824 | |
| 2 | H | N | -2.7861 | |
| 3 | K | N | -3.3824 | |
| 4 | G | N | -3.1920 | |
| 5 | H | N | -3.2072 | |
| 6 | K | N | -3.0290 | |
| 7 | G | N | -1.7966 | |
| 1 | G | O | 0.0000 | |
| 2 | H | O | -3.0952 | |
| 3 | K | O | -3.5263 | |
| 4 | G | O | -2.9088 | |
| 5 | H | O | -2.7311 | |
| 6 | K | O | -2.7978 | |
| 7 | G | O | -1.7004 | |
| 1 | G | P | -2.3902 | |
| 2 | H | P | -2.5536 | |
| 3 | K | P | -2.8935 | |
| 4 | G | P | -2.4739 | |
| 5 | H | P | -3.4149 | |
| 6 | K | P | -3.2655 | |
| 7 | G | P | -2.8808 | |
| 1 | G | Q | -2.5801 | |
| 2 | H | Q | 0.0000 | |
| 3 | K | Q | -3.2908 | |
| 4 | G | Q | 0.0000 | |
| 5 | H | Q | -3.5405 | |
| 6 | K | Q | -3.5375 | |
| 7 | G | Q | -2.8789 | |
| 1 | G | R | -2.4643 | |
| 2 | H | R | -2.4940 | |
| 3 | K | R | 0.0000 | |
| 4 | G | R | -2.5383 | |
| 5 | H | R | -2.7224 | |
| 6 | K | R | -2.4866 | |
| 7 | G | R | -1.6851 | |
| 1 | G | S | -3.1054 | |
| 2 | H | S | -4.3942 | |
| 3 | K | S | -5.3924 | |
| 4 | G | S | -3.9844 | |
| 5 | H | S | -3.8716 | |
| 6 | K | S | -3.7854 | |
| 7 | G | S | -2.5330 | |
| 1 | G | T | -3.8829 | |
| 2 | H | T | -4.4160 | |
| 3 | K | T | -5.0905 | |
| 4 | G | T | -3.8408 | |
| 5 | H | T | -3.6197 | |
| 6 | K | T | -3.2341 | |
| 7 | G | T | -1.8576 |