Project name: query_structure

Status: done

Started: 2026-03-17 01:15:19
Settings
Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDASSSSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLKPGVDYTITVYAQSGPYYWYWGDSPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:27)
Show buried residues

Minimal score value
-3.3396
Maximal score value
2.8469
Average score
-0.4377
Total score value
-41.1413

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.5683
2 S A 0.2665
3 D A -0.4436
4 V A -0.9690
5 P A 0.0000
6 R A -3.0227
7 D A -3.3396
8 L A 0.0000
9 E A -2.1246
10 V A 0.0691
11 V A 1.5118
12 A A 0.8668
13 A A 0.2744
14 T A -0.5599
15 P A -1.1625
16 T A -1.0148
17 S A -0.5577
18 L A 0.0000
19 L A 0.6927
20 I A 0.0000
21 S A -0.9341
22 W A 0.0000
23 D A -3.0791
24 A A -1.6096
25 S A -1.0237
26 S A -0.3841
27 S A -0.5009
28 S A -0.5451
29 V A 0.0000
30 S A -0.4711
31 Y A -0.2428
32 Y A 0.0000
33 R A -0.7302
34 I A 0.0000
35 T A -0.5209
36 Y A -0.2407
37 G A 0.0000
38 E A -1.4305
39 T A -1.1846
40 G A -1.2064
41 G A -1.3077
42 N A -1.5042
43 S A -0.7834
44 P A -0.2819
45 V A 0.4994
46 Q A -0.7509
47 E A -1.5761
48 F A -0.6450
49 T A -0.3369
50 V A 0.0000
51 P A -0.4259
52 G A -0.4667
53 S A -0.4312
54 S A -0.4980
55 S A -0.6663
56 T A -0.2914
57 A A 0.0000
58 T A 0.2744
59 I A 0.0000
60 S A -0.6699
61 G A -1.0360
62 L A 0.0000
63 K A -2.3541
64 P A -1.6516
65 G A -1.4275
66 V A -1.3930
67 D A -2.0400
68 Y A 0.0000
69 T A -0.6802
70 I A 0.0000
71 T A -0.2033
72 V A 0.0000
73 Y A -0.5049
74 A A 0.0000
75 Q A -0.2761
76 S A -0.0657
77 G A 0.6284
78 P A 0.6873
79 Y A 2.5645
80 Y A 2.8215
81 W A 2.8469
82 Y A 2.7530
83 W A 1.7632
84 G A -0.1655
85 D A -1.1443
86 S A -0.8403
87 P A -0.7758
88 I A -0.4563
89 S A -0.3796
90 I A -0.7224
91 N A -1.7107
92 Y A -1.4457
93 R A -2.5136
94 T A -1.5092
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018