| Chain sequence(s) |
H: EVQLVESGGGVVQPGGSLRLSCAASGFTFNSYGMHWVRQAPGKGLEWVAFIRYDGGNKYYADSVKGRFTISRDNSKNTLYLQMKSLRAEDTAVYYCANLKDSRYSGSYYDYWGQGTLVTVS
L: VIWMTQSPSSLSASVGDRVTITCQASQDIRFYLNWYQQKPGKAPKLLISDASNMETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPFTFGPGTKVDFK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:35)
[INFO] Main: Simulation completed successfully. (00:01:37)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.0232 | |
| 2 | V | H | -1.0660 | |
| 3 | Q | H | -1.1555 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.6741 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.2164 | |
| 8 | G | H | -0.6601 | |
| 9 | G | H | 0.2022 | |
| 11 | G | H | 0.9589 | |
| 12 | V | H | 1.6555 | |
| 13 | V | H | 0.1302 | |
| 14 | Q | H | -1.2739 | |
| 15 | P | H | -1.7620 | |
| 16 | G | H | -1.6919 | |
| 17 | G | H | -1.2751 | |
| 18 | S | H | -1.6009 | |
| 19 | L | H | -0.8853 | |
| 20 | R | H | -1.8648 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.3335 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.2025 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.8203 | |
| 27 | G | H | -1.1436 | |
| 28 | F | H | -0.5205 | |
| 29 | T | H | -0.2565 | |
| 30 | F | H | 0.0000 | |
| 35 | N | H | -1.2122 | |
| 36 | S | H | -0.2243 | |
| 37 | Y | H | 0.5211 | |
| 38 | G | H | 0.0000 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.6585 | |
| 45 | A | H | -1.0505 | |
| 46 | P | H | -0.8282 | |
| 47 | G | H | -1.4751 | |
| 48 | K | H | -2.2117 | |
| 49 | G | H | -1.3458 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8921 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | F | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | R | H | 0.0000 | |
| 58 | Y | H | 0.0544 | |
| 59 | D | H | -1.2604 | |
| 62 | G | H | -1.1425 | |
| 63 | G | H | -1.1346 | |
| 64 | N | H | -1.0196 | |
| 65 | K | H | -0.9932 | |
| 66 | Y | H | -0.2943 | |
| 67 | Y | H | -0.7831 | |
| 68 | A | H | 0.0000 | |
| 69 | D | H | -2.1910 | |
| 70 | S | H | -1.7574 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.4068 | |
| 74 | G | H | -1.8099 | |
| 75 | R | H | -1.9510 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -1.0271 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.5682 | |
| 80 | R | H | -1.0202 | |
| 81 | D | H | -1.6731 | |
| 82 | N | H | -1.9021 | |
| 83 | S | H | -1.6651 | |
| 84 | K | H | -2.3967 | |
| 85 | N | H | -1.7804 | |
| 86 | T | H | -1.0068 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.4351 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.3661 | |
| 91 | M | H | 0.0000 | |
| 92 | K | H | -2.4448 | |
| 93 | S | H | -1.7792 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.4968 | |
| 96 | A | H | -1.7276 | |
| 97 | E | H | -2.2632 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.3527 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.6260 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | N | H | 0.0000 | |
| 107 | L | H | 0.0000 | |
| 108 | K | H | -0.3874 | |
| 109 | D | H | 0.0000 | |
| 110 | S | H | -0.3636 | |
| 111 | R | H | -0.3929 | |
| 111A | Y | H | 0.8713 | |
| 112A | S | H | 0.0000 | |
| 112 | G | H | 0.1124 | |
| 113 | S | H | 0.1396 | |
| 114 | Y | H | -0.0611 | |
| 115 | Y | H | 0.0000 | |
| 116 | D | H | -0.1122 | |
| 117 | Y | H | 0.2532 | |
| 118 | W | H | -0.1399 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.1785 | |
| 121 | G | H | -0.2955 | |
| 122 | T | H | 0.5169 | |
| 123 | L | H | 1.5481 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.3422 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.7699 | |
| 1 | V | L | 1.6117 | |
| 2 | I | L | 0.0000 | |
| 3 | W | L | 1.1931 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.4125 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.4670 | |
| 8 | P | L | -0.5399 | |
| 9 | S | L | -0.7755 | |
| 10 | S | L | -0.9337 | |
| 11 | L | L | -0.5546 | |
| 12 | S | L | -0.6108 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.1710 | |
| 15 | V | L | 0.7145 | |
| 16 | G | L | -0.3917 | |
| 17 | D | L | -1.2032 | |
| 18 | R | L | -2.1083 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6200 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.6470 | |
| 23 | C | L | 0.0000 | |
| 24 | Q | L | -1.7000 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -0.6999 | |
| 27 | Q | L | -2.0031 | |
| 28 | D | L | -2.5152 | |
| 29 | I | L | 0.0000 | |
| 36 | R | L | -1.7968 | |
| 37 | F | L | 0.4274 | |
| 38 | Y | L | -0.1071 | |
| 39 | L | L | 0.0000 | |
| 40 | N | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | -0.8110 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.7796 | |
| 46 | P | L | -1.2669 | |
| 47 | G | L | -1.6996 | |
| 48 | K | L | -2.5521 | |
| 49 | A | L | -1.4925 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.1374 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | S | L | 0.0000 | |
| 56 | D | L | -0.5443 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.7590 | |
| 66 | N | L | -1.4040 | |
| 67 | M | L | -0.6438 | |
| 68 | E | L | -0.6376 | |
| 69 | T | L | -0.4592 | |
| 70 | G | L | -0.4845 | |
| 71 | V | L | -0.3192 | |
| 72 | P | L | -0.3657 | |
| 74 | S | L | -0.4461 | |
| 75 | R | L | -0.7962 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.5618 | |
| 78 | G | L | -0.6380 | |
| 79 | S | L | -0.6076 | |
| 80 | G | L | -0.8334 | |
| 83 | S | L | -1.0878 | |
| 84 | G | L | -1.7703 | |
| 85 | T | L | -1.9715 | |
| 86 | D | L | -2.1480 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.6488 | |
| 89 | F | L | 0.0000 | |
| 90 | T | L | 0.0000 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.3467 | |
| 93 | S | L | -1.0630 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.5075 | |
| 96 | P | L | -0.6498 | |
| 97 | E | L | -1.6962 | |
| 98 | D | L | 0.0000 | |
| 99 | I | L | -0.4585 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.9360 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.0000 | |
| 108 | D | L | -1.0901 | |
| 109 | N | L | -0.5477 | |
| 114 | L | L | 0.2835 | |
| 115 | P | L | 0.0967 | |
| 116 | F | L | 0.0000 | |
| 117 | T | L | 0.3007 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | P | L | -0.7619 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.7147 | |
| 124 | V | L | 0.0000 | |
| 125 | D | L | -0.4478 | |
| 126 | F | L | 0.4085 | |
| 127 | K | L | -1.0213 |