| Chain sequence(s) |
H: EVQLQQSGPELVKPGASVKISCKASGYTFTDYYMNWVKQSHGKSLEWIGDIYPNSGGTTYNQRFKGKATLTVDKSSSTTYMELRSLTSEDSAVYYCAKTGDWTVGNFDVWGTGTTVTVSS
L: QIVLTQSPAIMSASPGEKVTISCSASSSISYMYWYQQKPGSSPKPWIYRTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAATYYCQQYHSYPRTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:45)
[INFO] Main: Simulation completed successfully. (00:01:46)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.0317 | |
| 2 | V | H | -1.2482 | |
| 3 | Q | H | -1.9926 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -1.9645 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.9874 | |
| 8 | G | H | -0.7806 | |
| 9 | P | H | -0.4111 | |
| 11 | E | H | -0.3946 | |
| 12 | L | H | 0.8154 | |
| 13 | V | H | -0.2615 | |
| 14 | K | H | -1.7221 | |
| 15 | P | H | -1.4428 | |
| 16 | G | H | -1.2458 | |
| 17 | A | H | -1.0206 | |
| 18 | S | H | -1.1688 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.4203 | |
| 21 | I | H | 0.0000 | |
| 22 | S | H | -0.7154 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.7785 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.3141 | |
| 27 | G | H | -1.1238 | |
| 28 | Y | H | -0.5566 | |
| 29 | T | H | -0.3507 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -1.1305 | |
| 36 | D | H | -1.0124 | |
| 37 | Y | H | 0.0879 | |
| 38 | Y | H | 0.5134 | |
| 39 | M | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | -0.6736 | |
| 44 | Q | H | -1.0765 | |
| 45 | S | H | -1.6027 | |
| 46 | H | H | -1.9428 | |
| 47 | G | H | -1.8251 | |
| 48 | K | H | -2.4640 | |
| 49 | S | H | -1.4526 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.1013 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | D | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | Y | H | -0.0438 | |
| 58 | P | H | 0.0000 | |
| 59 | N | H | -1.6362 | |
| 62 | S | H | -0.9735 | |
| 63 | G | H | -0.8281 | |
| 64 | G | H | -0.4646 | |
| 65 | T | H | -0.0637 | |
| 66 | T | H | -0.1545 | |
| 67 | Y | H | -0.8566 | |
| 68 | N | H | 0.0000 | |
| 69 | Q | H | -2.6504 | |
| 70 | R | H | -3.0215 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.7888 | |
| 74 | G | H | -1.9158 | |
| 75 | K | H | -1.7482 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.7311 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.1006 | |
| 80 | V | H | -0.6203 | |
| 81 | D | H | -1.5192 | |
| 82 | K | H | -2.1801 | |
| 83 | S | H | -1.1680 | |
| 84 | S | H | -1.0130 | |
| 85 | S | H | -1.1746 | |
| 86 | T | H | 0.0000 | |
| 87 | T | H | 0.0000 | |
| 88 | Y | H | -0.1905 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -0.9760 | |
| 91 | L | H | 0.0000 | |
| 92 | R | H | -1.2901 | |
| 93 | S | H | -1.1027 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.3141 | |
| 96 | S | H | -1.4596 | |
| 97 | E | H | -2.0623 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.7745 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.1633 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | K | H | 0.0000 | |
| 107 | T | H | -0.0058 | |
| 108 | G | H | -0.2168 | |
| 109 | D | H | -0.4146 | |
| 110 | W | H | 0.6750 | |
| 111 | T | H | 0.2949 | |
| 112 | V | H | 0.0000 | |
| 113 | G | H | -0.2572 | |
| 114 | N | H | -0.3183 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.5516 | |
| 117 | V | H | -0.2759 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | T | H | -0.6044 | |
| 121 | G | H | -0.4146 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.2178 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.1889 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6161 | |
| 128 | S | H | -0.7495 | |
| 1 | Q | L | -0.8835 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.8591 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.0224 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.1087 | |
| 8 | P | L | 0.2623 | |
| 9 | A | L | 0.5923 | |
| 10 | I | L | 1.4218 | |
| 11 | M | L | 0.3996 | |
| 12 | S | L | -0.7335 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -1.8309 | |
| 15 | P | L | -1.9396 | |
| 16 | G | L | -2.0717 | |
| 17 | E | L | -3.1143 | |
| 18 | K | L | -2.8519 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6880 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.3436 | |
| 23 | C | L | 0.0000 | |
| 24 | S | L | -0.2466 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -0.0828 | |
| 27 | S | L | -0.3171 | |
| 28 | S | L | -0.5704 | |
| 29 | I | L | 0.0000 | |
| 37 | S | L | -0.3865 | |
| 38 | Y | L | 0.0279 | |
| 39 | M | L | 0.0000 | |
| 40 | Y | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.9378 | |
| 45 | K | L | -1.3335 | |
| 46 | P | L | -0.8816 | |
| 47 | G | L | -0.8385 | |
| 48 | S | L | -0.8331 | |
| 49 | S | L | -0.6181 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.1889 | |
| 52 | P | L | 0.0000 | |
| 53 | W | L | -0.2765 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.3755 | |
| 56 | R | L | -0.9478 | |
| 57 | T | L | 0.0000 | |
| 65 | S | L | -0.7953 | |
| 66 | N | L | -1.1334 | |
| 67 | L | L | -0.2272 | |
| 68 | A | L | 0.0000 | |
| 69 | S | L | -0.4264 | |
| 70 | G | L | -0.4040 | |
| 71 | V | L | -0.1266 | |
| 72 | P | L | -0.0857 | |
| 74 | A | L | -0.0637 | |
| 75 | R | L | -0.6470 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.3917 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.6204 | |
| 80 | G | L | -0.5310 | |
| 83 | S | L | -0.4795 | |
| 84 | G | L | -0.4927 | |
| 85 | T | L | -0.4933 | |
| 86 | S | L | -0.6152 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.3681 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.5743 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.4746 | |
| 93 | S | L | -1.9458 | |
| 94 | M | L | 0.0000 | |
| 95 | E | L | -2.2391 | |
| 96 | A | L | -1.6807 | |
| 97 | E | L | -2.2655 | |
| 98 | D | L | 0.0000 | |
| 99 | A | L | -1.5007 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.6128 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | -0.0693 | |
| 108 | H | L | -0.6229 | |
| 109 | S | L | -0.3122 | |
| 114 | Y | L | 0.2257 | |
| 115 | P | L | -0.5469 | |
| 116 | R | L | -0.1867 | |
| 117 | T | L | 0.0000 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.7706 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.5945 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.4301 | |
| 126 | I | L | -1.0253 | |
| 127 | K | L | -1.7927 |