Project name: 16.28G3

Status: done

Started: 2026-07-07 08:34:23
Settings
Chain sequence(s) H: EVQLQQSGPELVKPGASVKISCKASGYTFTDYYMNWVKQSHGKSLEWIGDIYPNSGGTTYNQRFKGKATLTVDKSSSTTYMELRSLTSEDSAVYYCAKTGDWTVGNFDVWGTGTTVTVSS
L: QIVLTQSPAIMSASPGEKVTISCSASSSISYMYWYQQKPGSSPKPWIYRTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAATYYCQQYHSYPRTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:46)
Show buried residues

Minimal score value
-3.1143
Maximal score value
1.4218
Average score
-0.5479
Total score value
-123.8238

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.0317
2 V H -1.2482
3 Q H -1.9926
4 L H 0.0000
5 Q H -1.9645
6 Q H 0.0000
7 S H -0.9874
8 G H -0.7806
9 P H -0.4111
11 E H -0.3946
12 L H 0.8154
13 V H -0.2615
14 K H -1.7221
15 P H -1.4428
16 G H -1.2458
17 A H -1.0206
18 S H -1.1688
19 V H 0.0000
20 K H -1.4203
21 I H 0.0000
22 S H -0.7154
23 C H 0.0000
24 K H -1.7785
25 A H 0.0000
26 S H -1.3141
27 G H -1.1238
28 Y H -0.5566
29 T H -0.3507
30 F H 0.0000
35 T H -1.1305
36 D H -1.0124
37 Y H 0.0879
38 Y H 0.5134
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H -0.6736
44 Q H -1.0765
45 S H -1.6027
46 H H -1.9428
47 G H -1.8251
48 K H -2.4640
49 S H -1.4526
50 L H 0.0000
51 E H -1.1013
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 D H 0.0000
56 I H 0.0000
57 Y H -0.0438
58 P H 0.0000
59 N H -1.6362
62 S H -0.9735
63 G H -0.8281
64 G H -0.4646
65 T H -0.0637
66 T H -0.1545
67 Y H -0.8566
68 N H 0.0000
69 Q H -2.6504
70 R H -3.0215
71 F H 0.0000
72 K H -2.7888
74 G H -1.9158
75 K H -1.7482
76 A H 0.0000
77 T H -0.7311
78 L H 0.0000
79 T H -0.1006
80 V H -0.6203
81 D H -1.5192
82 K H -2.1801
83 S H -1.1680
84 S H -1.0130
85 S H -1.1746
86 T H 0.0000
87 T H 0.0000
88 Y H -0.1905
89 M H 0.0000
90 E H -0.9760
91 L H 0.0000
92 R H -1.2901
93 S H -1.1027
94 L H 0.0000
95 T H -1.3141
96 S H -1.4596
97 E H -2.0623
98 D H 0.0000
99 S H -0.7745
100 A H 0.0000
101 V H -0.1633
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 K H 0.0000
107 T H -0.0058
108 G H -0.2168
109 D H -0.4146
110 W H 0.6750
111 T H 0.2949
112 V H 0.0000
113 G H -0.2572
114 N H -0.3183
115 F H 0.0000
116 D H -0.5516
117 V H -0.2759
118 W H 0.0000
119 G H 0.0000
120 T H -0.6044
121 G H -0.4146
122 T H 0.0000
123 T H -0.2178
124 V H 0.0000
125 T H -0.1889
126 V H 0.0000
127 S H -0.6161
128 S H -0.7495
1 Q L -0.8835
2 I L 0.0000
3 V L 0.8591
4 L L 0.0000
5 T L -0.0224
6 Q L 0.0000
7 S L -0.1087
8 P L 0.2623
9 A L 0.5923
10 I L 1.4218
11 M L 0.3996
12 S L -0.7335
13 A L 0.0000
14 S L -1.8309
15 P L -1.9396
16 G L -2.0717
17 E L -3.1143
18 K L -2.8519
19 V L 0.0000
20 T L -0.6880
21 I L 0.0000
22 S L -0.3436
23 C L 0.0000
24 S L -0.2466
25 A L 0.0000
26 S L -0.0828
27 S L -0.3171
28 S L -0.5704
29 I L 0.0000
37 S L -0.3865
38 Y L 0.0279
39 M L 0.0000
40 Y L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.9378
45 K L -1.3335
46 P L -0.8816
47 G L -0.8385
48 S L -0.8331
49 S L -0.6181
50 P L 0.0000
51 K L -1.1889
52 P L 0.0000
53 W L -0.2765
54 I L 0.0000
55 Y L -0.3755
56 R L -0.9478
57 T L 0.0000
65 S L -0.7953
66 N L -1.1334
67 L L -0.2272
68 A L 0.0000
69 S L -0.4264
70 G L -0.4040
71 V L -0.1266
72 P L -0.0857
74 A L -0.0637
75 R L -0.6470
76 F L 0.0000
77 S L -0.3917
78 G L 0.0000
79 S L -0.6204
80 G L -0.5310
83 S L -0.4795
84 G L -0.4927
85 T L -0.4933
86 S L -0.6152
87 Y L 0.0000
88 S L -0.3681
89 L L 0.0000
90 T L -0.5743
91 I L 0.0000
92 S L -1.4746
93 S L -1.9458
94 M L 0.0000
95 E L -2.2391
96 A L -1.6807
97 E L -2.2655
98 D L 0.0000
99 A L -1.5007
100 A L 0.0000
101 T L -0.6128
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L -0.0693
108 H L -0.6229
109 S L -0.3122
114 Y L 0.2257
115 P L -0.5469
116 R L -0.1867
117 T L 0.0000
118 F L 0.0000
119 G L 0.0000
120 G L -0.7706
121 G L 0.0000
122 T L 0.0000
123 K L -0.5945
124 L L 0.0000
125 E L -1.4301
126 I L -1.0253
127 K L -1.7927
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Laboratory of Theory of Biopolymers 2018