| Chain sequence(s) |
A: AEAEAKAKAEAEAKAK
C: AEAEAKAKAEAEAKAK B: AEAEAKAKAEAEAKAK E: AEAEAKAKAEAEAKAK D: AEAEAKAKAEAEAKAK G: AEAEAKAKAEAEAKAK F: AEAEAKAKAEAEAKAK I: AEAEAKAKAEAEAKAK H: AEAEAKAKAEAEAKAK K: KAEAEAKAK J: AEAEAKAKAEAEAKAK L: KAEAEAKAK input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:21:51)
[INFO] Main: Simulation completed successfully. (00:21:55)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -2.0388 | |
| 2 | E | A | -2.4939 | |
| 3 | A | A | -1.9965 | |
| 4 | E | A | -2.5358 | |
| 5 | A | A | -2.4276 | |
| 6 | K | A | -3.2531 | |
| 7 | A | A | -2.6862 | |
| 8 | K | A | -3.1248 | |
| 9 | A | A | -2.8226 | |
| 10 | E | A | -3.7955 | |
| 11 | A | A | -3.1517 | |
| 12 | E | A | -3.7802 | |
| 13 | A | A | -3.0395 | |
| 14 | K | A | -3.4334 | |
| 15 | A | A | -2.5910 | |
| 16 | K | A | -2.9215 | |
| 1 | A | B | 0.0000 | |
| 2 | E | B | 0.0000 | |
| 3 | A | B | -1.0968 | |
| 4 | E | B | -1.4410 | |
| 5 | A | B | -1.4444 | |
| 6 | K | B | -2.0833 | |
| 7 | A | B | -1.9942 | |
| 8 | K | B | -2.6370 | |
| 9 | A | B | -2.0572 | |
| 10 | E | B | -3.2410 | |
| 11 | A | B | -2.9555 | |
| 12 | E | B | -2.9501 | |
| 13 | A | B | -2.5968 | |
| 14 | K | B | -3.3358 | |
| 15 | A | B | -2.2846 | |
| 16 | K | B | -2.6903 | |
| 1 | A | C | -1.3114 | |
| 2 | E | C | -2.3213 | |
| 3 | A | C | -1.7821 | |
| 4 | E | C | -2.1076 | |
| 5 | A | C | -1.8638 | |
| 6 | K | C | -2.3558 | |
| 7 | A | C | -1.7154 | |
| 8 | K | C | -2.0545 | |
| 9 | A | C | -2.5298 | |
| 10 | E | C | -2.3922 | |
| 11 | A | C | -2.3187 | |
| 12 | E | C | -2.8843 | |
| 13 | A | C | -3.0081 | |
| 14 | K | C | -3.2271 | |
| 15 | A | C | 0.0000 | |
| 16 | K | C | -3.4343 | |
| 1 | A | D | -1.6974 | |
| 2 | E | D | -2.9861 | |
| 3 | A | D | -2.7531 | |
| 4 | E | D | -3.3370 | |
| 5 | A | D | -2.9414 | |
| 6 | K | D | -3.4669 | |
| 7 | A | D | -2.9198 | |
| 8 | K | D | -3.6062 | |
| 9 | A | D | -2.5677 | |
| 10 | E | D | -2.8012 | |
| 11 | A | D | -2.5804 | |
| 12 | E | D | -3.4300 | |
| 13 | A | D | -2.5308 | |
| 14 | K | D | -3.0589 | |
| 15 | A | D | -2.3152 | |
| 16 | K | D | -2.7337 | |
| 1 | A | E | -2.4937 | |
| 2 | E | E | -2.2273 | |
| 3 | A | E | -1.9383 | |
| 4 | E | E | -2.6476 | |
| 5 | A | E | -2.1490 | |
| 6 | K | E | -2.8815 | |
| 7 | A | E | -2.8593 | |
| 8 | K | E | -3.3513 | |
| 9 | A | E | -2.9174 | |
| 10 | E | E | -3.6233 | |
| 11 | A | E | -3.3466 | |
| 12 | E | E | -3.7040 | |
| 13 | A | E | -2.9824 | |
| 14 | K | E | -3.1952 | |
| 15 | A | E | -2.4498 | |
| 16 | K | E | -2.6134 | |
| 1 | A | F | -1.6259 | |
| 2 | E | F | -2.0707 | |
| 3 | A | F | -1.3765 | |
| 4 | E | F | -2.2108 | |
| 5 | A | F | -2.2882 | |
| 6 | K | F | -2.1783 | |
| 7 | A | F | -1.7758 | |
| 8 | K | F | -2.3214 | |
| 9 | A | F | -2.3276 | |
| 10 | E | F | -2.3269 | |
| 11 | A | F | -2.1482 | |
| 12 | E | F | -2.4139 | |
| 13 | A | F | -2.2295 | |
| 14 | K | F | -2.8240 | |
| 15 | A | F | -2.0575 | |
| 16 | K | F | -2.4201 | |
| 1 | A | G | -1.1220 | |
| 2 | E | G | -2.1085 | |
| 3 | A | G | -2.4777 | |
| 4 | E | G | -2.6184 | |
| 5 | A | G | -1.9361 | |
| 6 | K | G | -2.1215 | |
| 7 | A | G | -2.3963 | |
| 8 | K | G | -2.7851 | |
| 9 | A | G | -1.9852 | |
| 10 | E | G | -2.1505 | |
| 11 | A | G | -2.1111 | |
| 12 | E | G | -2.9975 | |
| 13 | A | G | -2.6320 | |
| 14 | K | G | -2.5353 | |
| 15 | A | G | -2.0138 | |
| 16 | K | G | -2.5255 | |
| 1 | A | H | -1.8247 | |
| 2 | E | H | -2.7498 | |
| 3 | A | H | -2.6581 | |
| 4 | E | H | -2.8047 | |
| 5 | A | H | -2.7094 | |
| 6 | K | H | -3.4379 | |
| 7 | A | H | -3.3839 | |
| 8 | K | H | -3.7585 | |
| 9 | A | H | -3.1572 | |
| 10 | E | H | -3.7623 | |
| 11 | A | H | -3.4677 | |
| 12 | E | H | -3.7696 | |
| 13 | A | H | -2.9925 | |
| 14 | K | H | -3.3073 | |
| 15 | A | H | -2.5637 | |
| 16 | K | H | -2.6543 | |
| 1 | A | I | -1.7963 | |
| 2 | E | I | -2.4932 | |
| 3 | A | I | -2.2014 | |
| 4 | E | I | -3.2914 | |
| 5 | A | I | -2.6529 | |
| 6 | K | I | -2.7759 | |
| 7 | A | I | 0.0000 | |
| 8 | K | I | -3.0139 | |
| 9 | A | I | -2.2784 | |
| 10 | E | I | -2.3524 | |
| 11 | A | I | -2.8848 | |
| 12 | E | I | -2.8018 | |
| 13 | A | I | -2.2136 | |
| 14 | K | I | -2.8419 | |
| 15 | A | I | -2.1237 | |
| 16 | K | I | -2.5254 | |
| 1 | A | J | -1.7089 | |
| 2 | E | J | -2.8178 | |
| 3 | A | J | -2.4714 | |
| 4 | E | J | -2.6783 | |
| 5 | A | J | -2.2243 | |
| 6 | K | J | -3.0185 | |
| 7 | A | J | -2.6216 | |
| 8 | K | J | -3.1995 | |
| 9 | A | J | -2.7449 | |
| 10 | E | J | -3.2245 | |
| 11 | A | J | -2.7324 | |
| 12 | E | J | -3.4265 | |
| 13 | A | J | -2.9787 | |
| 14 | K | J | -3.5560 | |
| 15 | A | J | -2.3809 | |
| 16 | K | J | -2.7689 | |
| 1 | K | K | -3.5838 | |
| 2 | A | K | -2.4085 | |
| 3 | E | K | -3.1384 | |
| 4 | A | K | -3.4673 | |
| 5 | E | K | -3.7347 | |
| 6 | A | K | -2.7412 | |
| 7 | K | K | -3.4107 | |
| 8 | A | K | -2.5623 | |
| 9 | K | K | -2.6817 | |
| 1 | K | L | -2.8948 | |
| 2 | A | L | -2.9375 | |
| 3 | E | L | -3.4713 | |
| 4 | A | L | -2.6964 | |
| 5 | E | L | -3.4611 | |
| 6 | A | L | -2.7577 | |
| 7 | K | L | -2.9899 | |
| 8 | A | L | -2.4831 | |
| 9 | K | L | -2.4953 |