Project name: 1JSF [mutate: FI57A, TN70A]

Status: done

Started: 2024-11-21 07:19:23
Settings
Chain sequence(s) A: KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues FI57A,TN70A
Energy difference between WT (input) and mutated protein (by FoldX) 7.14039 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:31)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:35)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:07)
Show buried residues

Minimal score value
-4.2649
Maximal score value
1.5699
Average score
-1.0204
Total score value
-132.6582

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.8507
2 V A -0.0612
3 F A 0.0000
4 E A -2.1395
5 R A -2.1296
6 C A -1.7866
7 E A -2.0638
8 L A 0.0000
9 A A 0.0000
10 R A -2.8341
11 T A 0.0000
12 L A 0.0000
13 K A -2.6947
14 R A -2.7548
15 L A -1.3923
16 G A -1.4418
17 M A 0.0000
18 D A -2.2864
19 G A -1.7900
20 Y A -1.7450
21 R A -2.7384
22 G A -1.6696
23 I A 0.0000
24 S A -1.3084
25 L A 0.0000
26 A A 0.0000
27 N A -1.2242
28 W A 0.0000
29 M A 0.0000
30 C A 0.0000
31 L A 0.0000
32 A A 0.0000
33 K A -1.2408
34 W A -0.6202
35 E A -0.6087
36 S A -0.7805
37 G A -0.7671
38 Y A 0.0000
39 N A -1.2456
40 T A 0.0000
41 R A -2.3053
42 A A -1.2328
43 T A -0.7744
44 N A -0.4131
45 Y A 0.0374
46 N A -1.1241
47 A A -1.1733
48 G A -1.6509
49 D A -2.6853
50 R A -2.9637
51 S A 0.0000
52 T A 0.0000
53 D A -0.5015
54 Y A 0.0000
55 G A 0.0000
56 I A 0.0000
57 I A 0.0000 mutated: FI57A
58 Q A -0.6887
59 I A 0.0000
60 N A -0.3748
61 S A 0.0000
62 R A -0.6491
63 Y A 1.2085
64 W A 0.2681
65 C A 0.0000
66 N A -1.0903
67 D A -1.5904
68 G A -1.7647
69 K A -2.5372
70 N A 0.0000 mutated: TN70A
71 P A -1.4704
72 G A -0.6626
73 A A 0.1302
74 V A 1.5699
75 N A 0.2426
76 A A 0.1945
77 C A -0.4252
78 H A -0.7708
79 L A -0.6274
80 S A -0.7582
81 C A 0.0000
82 S A -0.6188
83 A A -0.7873
84 L A 0.0000
85 L A -1.6562
86 Q A -2.4728
87 D A -3.1196
88 N A -2.5843
89 I A 0.0000
90 A A -0.8480
91 D A -0.8950
92 A A 0.0000
93 V A 0.0000
94 A A -0.4961
95 C A 0.0000
96 A A 0.0000
97 K A -1.7211
98 R A -2.0279
99 V A 0.0000
100 V A 0.0000
101 R A -3.1347
102 D A -2.4116
103 P A -1.4007
104 Q A -1.4260
105 G A -1.9661
106 I A 0.0000
107 R A -1.6874
108 A A -0.6021
109 W A 0.0000
110 V A 0.3399
111 A A -0.7427
112 W A -1.6110
113 R A -2.8788
114 N A -2.7648
115 R A -2.7587
116 C A 0.0000
117 Q A -3.2159
118 N A -3.3732
119 R A -4.2649
120 D A -3.7391
121 V A -3.0881
122 R A -3.4303
123 Q A -2.8317
124 Y A 0.0000
125 V A 0.0000
126 Q A -2.2603
127 G A -1.2421
128 C A 0.0000
129 G A -0.7150
130 V A -0.4688
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Laboratory of Theory of Biopolymers 2018