| Chain sequence(s) |
A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | FA20A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 1.1199 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:35)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:37)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:52)
[INFO] Main: Simulation completed successfully. (00:00:52)
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:01:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:01:04)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:24)
[INFO] Main: Simulation completed successfully. (00:01:25)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -2.7234 | |
| 2 | A | A | -2.4232 | |
| 3 | E | A | -2.5698 | |
| 4 | F | A | -0.9930 | |
| 5 | R | A | -2.7524 | |
| 6 | H | A | -3.0663 | |
| 7 | D | A | -2.6470 | |
| 8 | S | A | -1.3777 | |
| 9 | G | A | -0.6319 | |
| 10 | Y | A | -0.2762 | |
| 11 | E | A | -1.1259 | |
| 12 | V | A | 0.4333 | |
| 13 | H | A | -1.1192 | |
| 14 | H | A | -1.1008 | |
| 15 | Q | A | -0.6251 | |
| 16 | K | A | -1.0635 | |
| 17 | L | A | 0.3487 | |
| 18 | V | A | 0.0099 | |
| 19 | F | A | 1.0799 | |
| 20 | A | A | 0.3609 | mutated: FA20A |
| 21 | A | A | -0.1291 | |
| 22 | E | A | -1.3591 | |
| 23 | D | A | -1.7343 | |
| 24 | V | A | -0.5842 | |
| 25 | G | A | -1.3791 | |
| 26 | S | A | -1.5827 | |
| 27 | N | A | -2.1092 | |
| 28 | K | A | -1.7247 | |
| 29 | G | A | -0.2226 | |
| 30 | A | A | 0.3033 | |
| 31 | I | A | 2.3244 | |
| 32 | I | A | 3.1794 | |
| 33 | G | A | 2.2928 | |
| 34 | L | A | 3.0370 | |
| 35 | M | A | 3.4128 | |
| 36 | V | A | 2.9309 | |
| 37 | G | A | 1.9805 | |
| 38 | G | A | 1.8506 | |
| 39 | V | A | 3.0303 | |
| 40 | V | A | 3.8449 | |
| 41 | I | A | 3.4841 | |
| 42 | A | A | 1.8350 |