Project name: a beta 42 [mutate: FA19A, FA20A] [mutate: FA20A]

Status: done

Started: 2026-06-01 14:06:27
Settings
Chain sequence(s) A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues FA20A
Energy difference between WT (input) and mutated protein (by FoldX) 1.1199 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:35)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:37)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:52)
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:04)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:25)
Show buried residues

Minimal score value
-3.0663
Maximal score value
3.8449
Average score
0.01
Total score value
0.4183

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -2.7234
2 A A -2.4232
3 E A -2.5698
4 F A -0.9930
5 R A -2.7524
6 H A -3.0663
7 D A -2.6470
8 S A -1.3777
9 G A -0.6319
10 Y A -0.2762
11 E A -1.1259
12 V A 0.4333
13 H A -1.1192
14 H A -1.1008
15 Q A -0.6251
16 K A -1.0635
17 L A 0.3487
18 V A 0.0099
19 F A 1.0799
20 A A 0.3609 mutated: FA20A
21 A A -0.1291
22 E A -1.3591
23 D A -1.7343
24 V A -0.5842
25 G A -1.3791
26 S A -1.5827
27 N A -2.1092
28 K A -1.7247
29 G A -0.2226
30 A A 0.3033
31 I A 2.3244
32 I A 3.1794
33 G A 2.2928
34 L A 3.0370
35 M A 3.4128
36 V A 2.9309
37 G A 1.9805
38 G A 1.8506
39 V A 3.0303
40 V A 3.8449
41 I A 3.4841
42 A A 1.8350
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Laboratory of Theory of Biopolymers 2018