Project name: query_structure

Status: done

Started: 2026-03-17 01:15:14
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAPTFRTYYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTWQLMPSKPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:47)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:48)
Show buried residues

Minimal score value
-3.3412
Maximal score value
1.9099
Average score
-0.6252
Total score value
-56.8956

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.7330
2 S A 0.1935
3 D A -0.8433
4 V A -1.0724
5 P A 0.0000
6 R A -3.1258
7 D A -3.3412
8 L A 0.0000
9 E A -2.0980
10 V A 0.1113
11 V A 1.5499
12 A A 0.9035
13 A A 0.3187
14 T A -0.3390
15 P A -1.1166
16 T A -0.9981
17 S A -0.5275
18 L A 0.0000
19 L A 0.7600
20 I A 0.0000
21 S A -1.1344
22 W A 0.0000
23 D A -3.2188
24 A A -1.8844
25 P A -0.7525
26 T A -0.0537
27 F A 0.4418
28 R A -0.9279
29 T A 0.0774
30 Y A 1.4539
31 Y A 0.4559
32 Y A 0.0000
33 R A -0.4685
34 I A 0.0000
35 T A -0.5938
36 Y A -0.3911
37 G A -0.8830
38 E A -1.9383
39 T A -1.6159
40 G A -1.4041
41 G A -1.5752
42 N A -1.5848
43 S A -0.9659
44 P A -0.4209
45 V A 0.2845
46 Q A -1.1058
47 E A -1.7549
48 F A -0.7022
49 T A -0.3098
50 V A 0.0000
51 P A -0.4842
52 G A -0.5093
53 S A -1.1056
54 K A -2.0896
55 S A -1.4456
56 T A -0.7760
57 A A 0.0000
58 T A 0.2414
59 I A 0.0000
60 S A -0.6606
61 G A -1.0301
62 L A 0.0000
63 K A -2.5016
64 P A -1.7958
65 G A -1.6747
66 V A -1.8919
67 D A -3.0715
68 Y A 0.0000
69 T A -1.0189
70 I A 0.0000
71 T A -0.3414
72 V A 0.0000
73 Y A -0.3310
74 A A 0.0000
75 V A 0.0000
76 T A 0.9893
77 W A 1.1947
78 Q A 0.4427
79 L A 1.9099
80 M A 1.3190
81 P A 0.1208
82 S A 0.0000
83 K A -1.7104
84 P A -1.0206
85 I A -0.6120
86 S A -0.8413
87 I A -0.7415
88 N A -1.9663
89 Y A -1.8043
90 R A -2.9637
91 T A -1.8611
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Laboratory of Theory of Biopolymers 2018