| Chain sequence(s) |
A: MVQLQESGGGSVQAGGSLRLSCVASGDTASMYCMGWFRQAPGKEREEVATIDSDGSVSIADSLKGRFTISKDSANNALYLHMNSLRPEDTANYYCAAGRPPCGSIFKPGYYYYGMDYWGKGTLVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:05)
[INFO] Main: Simulation completed successfully. (00:01:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | M | A | 0.1609 | |
| 2 | V | A | 0.0000 | |
| 3 | Q | A | -1.5979 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.5348 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5443 | |
| 8 | G | A | -0.7779 | |
| 9 | G | A | -0.3407 | |
| 10 | G | A | -0.2098 | |
| 11 | S | A | -0.3174 | |
| 12 | V | A | -0.8814 | |
| 13 | Q | A | -1.7260 | |
| 14 | A | A | -1.9586 | |
| 15 | G | A | -1.6543 | |
| 16 | G | A | -1.3735 | |
| 17 | S | A | -1.6201 | |
| 18 | L | A | -1.2685 | |
| 19 | R | A | -2.0995 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5952 | |
| 22 | C | A | 0.0000 | |
| 23 | V | A | -0.1102 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.2549 | |
| 26 | G | A | -1.4284 | |
| 27 | D | A | -1.9594 | |
| 28 | T | A | -1.2413 | |
| 29 | A | A | -0.6897 | |
| 30 | S | A | -0.6877 | |
| 31 | M | A | 0.0000 | |
| 32 | Y | A | -0.2433 | |
| 33 | C | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | -1.1762 | |
| 38 | R | A | -1.8548 | |
| 39 | Q | A | -2.6196 | |
| 40 | A | A | -2.1218 | |
| 41 | P | A | -1.6206 | |
| 42 | G | A | -2.0358 | |
| 43 | K | A | -3.5279 | |
| 44 | E | A | -4.0289 | |
| 45 | R | A | -3.7334 | |
| 46 | E | A | -3.0869 | |
| 47 | E | A | -2.3123 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | D | A | -0.7450 | |
| 53 | S | A | -1.2713 | |
| 54 | D | A | -1.9808 | |
| 55 | G | A | -1.1965 | |
| 56 | S | A | -0.4552 | |
| 57 | V | A | 0.7964 | |
| 58 | S | A | 0.0785 | |
| 59 | I | A | -0.6126 | |
| 60 | A | A | -1.6896 | |
| 61 | D | A | -2.3990 | |
| 62 | S | A | -1.6233 | |
| 63 | L | A | 0.0000 | |
| 64 | K | A | -2.5828 | |
| 65 | G | A | -1.8958 | |
| 66 | R | A | -1.7245 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.7941 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.4039 | |
| 71 | K | A | -1.1994 | |
| 72 | D | A | -1.2347 | |
| 73 | S | A | -1.0839 | |
| 74 | A | A | -1.0290 | |
| 75 | N | A | -1.5926 | |
| 76 | N | A | -1.1583 | |
| 77 | A | A | 0.0000 | |
| 78 | L | A | 0.0000 | |
| 79 | Y | A | -0.4953 | |
| 80 | L | A | 0.0000 | |
| 81 | H | A | -1.4484 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -2.2875 | |
| 84 | S | A | -1.7507 | |
| 85 | L | A | 0.0000 | |
| 86 | R | A | -3.0379 | |
| 87 | P | A | -2.1597 | |
| 88 | E | A | -2.5004 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.9619 | |
| 91 | A | A | 0.0000 | |
| 92 | N | A | -0.3271 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.7436 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | G | A | 0.0000 | |
| 99 | R | A | -1.8117 | |
| 100 | P | A | -1.0742 | |
| 101 | P | A | -0.8732 | |
| 102 | C | A | 0.0000 | |
| 103 | G | A | -0.8304 | |
| 104 | S | A | 0.2802 | |
| 105 | I | A | 0.9797 | |
| 106 | F | A | 0.0730 | |
| 107 | K | A | -1.0276 | |
| 108 | P | A | -0.6018 | |
| 109 | G | A | 0.1387 | |
| 110 | Y | A | 1.8068 | |
| 111 | Y | A | 2.7442 | |
| 112 | Y | A | 2.6155 | |
| 113 | Y | A | 2.1798 | |
| 114 | G | A | 0.2854 | |
| 115 | M | A | -0.3923 | |
| 116 | D | A | -1.5619 | |
| 117 | Y | A | -0.8370 | |
| 118 | W | A | -0.5918 | |
| 119 | G | A | -1.0520 | |
| 120 | K | A | -2.0115 | |
| 121 | G | A | 0.0000 | |
| 122 | T | A | -0.1171 | |
| 123 | L | A | 0.9886 | |
| 124 | V | A | 0.0000 | |
| 125 | T | A | -0.4911 | |
| 126 | V | A | 0.0000 | |
| 127 | S | A | -1.2538 | |
| 128 | S | A | -0.9694 |