| Chain sequence(s) |
A: QVQLQESGPGLVKPSETLSLTCTVSGFSLTSYGVHWIRQPPGKGLEWIGVIYADGSTNYNPSLKSRVTISKDTSKNQVSLKLSSVTAADTAVYYCARAYGNYWYIDVWGQGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVES
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:33)
[INFO] Main: Simulation completed successfully. (00:02:34)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4913 | |
| 2 | V | A | -0.8962 | |
| 3 | Q | A | -1.7770 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.8515 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.8307 | |
| 8 | G | A | -0.5117 | |
| 9 | P | A | -0.4966 | |
| 10 | G | A | -0.5319 | |
| 11 | L | A | -0.5492 | |
| 12 | V | A | 0.0000 | |
| 13 | K | A | -2.1249 | |
| 14 | P | A | -1.4064 | |
| 15 | S | A | -1.2461 | |
| 16 | E | A | -1.5843 | |
| 17 | T | A | -1.1776 | |
| 18 | L | A | 0.0000 | |
| 19 | S | A | -0.7811 | |
| 20 | L | A | 0.0000 | |
| 21 | T | A | -0.6910 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -1.2754 | |
| 24 | V | A | 0.0000 | |
| 25 | S | A | -1.1738 | |
| 26 | G | A | -1.0205 | |
| 27 | F | A | -0.4145 | |
| 28 | S | A | -0.4704 | |
| 29 | L | A | 0.0000 | |
| 30 | T | A | -0.6299 | |
| 31 | S | A | -0.3015 | |
| 32 | Y | A | 0.0737 | |
| 33 | G | A | 0.1726 | |
| 34 | V | A | 0.0000 | |
| 35 | H | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | I | A | 0.0000 | |
| 38 | R | A | -0.1296 | |
| 39 | Q | A | -0.5525 | |
| 40 | P | A | -0.8958 | |
| 41 | P | A | -1.0300 | |
| 42 | G | A | -1.4283 | |
| 43 | K | A | -2.0875 | |
| 44 | G | A | -0.9053 | |
| 45 | L | A | 0.5819 | |
| 46 | E | A | -0.0582 | |
| 47 | W | A | 0.3574 | |
| 48 | I | A | 0.0000 | |
| 49 | G | A | 0.0000 | |
| 50 | V | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | Y | A | -0.3875 | |
| 53 | A | A | -0.7437 | |
| 54 | D | A | -1.8056 | |
| 55 | G | A | -1.2217 | |
| 56 | S | A | -0.8820 | |
| 57 | T | A | -0.7290 | |
| 58 | N | A | -0.9314 | |
| 59 | Y | A | -0.6168 | |
| 60 | N | A | -0.7951 | |
| 61 | P | A | -1.1502 | |
| 62 | S | A | -0.9918 | |
| 63 | L | A | 0.0000 | |
| 64 | K | A | -2.0730 | |
| 65 | S | A | -1.3245 | |
| 66 | R | A | -1.3052 | |
| 67 | V | A | 0.0000 | |
| 68 | T | A | -0.6934 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.7662 | |
| 71 | K | A | -1.2075 | |
| 72 | D | A | -1.6769 | |
| 73 | T | A | -1.3763 | |
| 74 | S | A | -1.4730 | |
| 75 | K | A | -2.3219 | |
| 76 | N | A | -1.6694 | |
| 77 | Q | A | -1.6112 | |
| 78 | V | A | 0.0000 | |
| 79 | S | A | -0.7289 | |
| 80 | L | A | 0.0000 | |
| 81 | K | A | -1.2484 | |
| 82 | L | A | 0.0000 | |
| 83 | S | A | -0.9593 | |
| 84 | S | A | -0.9317 | |
| 85 | V | A | 0.0000 | |
| 86 | T | A | -0.5658 | |
| 87 | A | A | -0.2437 | |
| 88 | A | A | 0.0471 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.0443 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | 0.1305 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.0421 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | R | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | Y | A | 1.2778 | |
| 100 | G | A | 0.3059 | |
| 101 | N | A | -0.1649 | |
| 102 | Y | A | 1.3814 | |
| 103 | W | A | 1.8443 | |
| 104 | Y | A | 2.1071 | |
| 105 | I | A | 1.3722 | |
| 106 | D | A | 0.6490 | |
| 107 | V | A | 0.4454 | |
| 108 | W | A | 0.0166 | |
| 109 | G | A | -0.9248 | |
| 110 | Q | A | -1.5062 | |
| 111 | G | A | -0.7659 | |
| 112 | T | A | -0.5526 | |
| 113 | T | A | -0.2722 | |
| 114 | V | A | 0.0000 | |
| 115 | T | A | 0.0000 | |
| 116 | V | A | 0.0000 | |
| 117 | S | A | -0.7681 | |
| 118 | S | A | -0.9108 | |
| 119 | A | A | -0.5774 | |
| 120 | S | A | -0.7074 | |
| 121 | T | A | -0.7114 | |
| 122 | K | A | -1.5746 | |
| 123 | G | A | -1.6468 | |
| 124 | P | A | -0.8380 | |
| 125 | S | A | -0.3905 | |
| 126 | V | A | 0.0000 | |
| 127 | F | A | 0.4901 | |
| 128 | P | A | -0.2640 | |
| 129 | L | A | 0.3190 | |
| 130 | A | A | -0.3406 | |
| 131 | P | A | -0.5278 | |
| 132 | C | A | 0.0679 | |
| 133 | S | A | -0.8402 | |
| 134 | R | A | -2.2441 | |
| 135 | S | A | -1.5337 | |
| 136 | T | A | -1.2000 | |
| 137 | S | A | -1.2710 | |
| 138 | E | A | -2.1036 | |
| 139 | S | A | -1.1781 | |
| 140 | T | A | -0.8233 | |
| 141 | A | A | 0.0000 | |
| 142 | A | A | 0.1759 | |
| 143 | L | A | 0.0000 | |
| 144 | G | A | 0.0000 | |
| 145 | C | A | 0.0000 | |
| 146 | L | A | 0.4314 | |
| 147 | V | A | 0.0000 | |
| 148 | K | A | -0.3764 | |
| 149 | D | A | -1.0756 | |
| 150 | Y | A | 0.0000 | |
| 151 | F | A | -0.3777 | |
| 152 | P | A | 0.0000 | |
| 153 | E | A | -0.5260 | |
| 154 | P | A | -0.6152 | |
| 155 | V | A | -0.3616 | |
| 156 | T | A | -0.4978 | |
| 157 | V | A | -0.1910 | |
| 158 | S | A | -0.4662 | |
| 159 | W | A | 0.0000 | |
| 160 | N | A | -0.9184 | |
| 161 | S | A | -0.7592 | |
| 162 | G | A | -0.5896 | |
| 163 | A | A | -0.2229 | |
| 164 | L | A | -0.0402 | |
| 165 | T | A | -0.3063 | |
| 166 | S | A | -0.4229 | |
| 167 | G | A | -0.4862 | |
| 168 | V | A | -0.0008 | |
| 169 | H | A | -0.3756 | |
| 170 | T | A | 0.2773 | |
| 171 | F | A | 1.1000 | |
| 172 | P | A | 0.8077 | |
| 173 | A | A | 1.2924 | |
| 174 | V | A | 2.4912 | |
| 175 | L | A | 1.9573 | |
| 176 | Q | A | 0.2684 | |
| 177 | S | A | -0.3153 | |
| 178 | S | A | -0.4630 | |
| 179 | G | A | -0.0936 | |
| 180 | L | A | 0.0363 | |
| 181 | Y | A | 0.7544 | |
| 182 | S | A | 0.0000 | |
| 183 | L | A | 0.0000 | |
| 184 | S | A | 0.6375 | |
| 185 | S | A | 0.0000 | |
| 186 | V | A | 0.5182 | |
| 187 | V | A | 0.0000 | |
| 188 | T | A | -0.1918 | |
| 189 | V | A | 0.0000 | |
| 190 | P | A | -0.5844 | |
| 191 | S | A | -0.9234 | |
| 192 | S | A | -0.7041 | |
| 193 | S | A | -0.5930 | |
| 194 | L | A | -1.0400 | |
| 195 | G | A | -1.0131 | |
| 196 | T | A | -0.8050 | |
| 197 | K | A | -1.4607 | |
| 198 | T | A | -1.4128 | |
| 199 | Y | A | 0.0000 | |
| 200 | T | A | 0.0000 | |
| 201 | C | A | 0.0000 | |
| 202 | N | A | -1.7245 | |
| 203 | V | A | 0.0000 | |
| 204 | D | A | -1.8245 | |
| 205 | H | A | 0.0000 | |
| 206 | K | A | -2.6525 | |
| 207 | P | A | -1.5712 | |
| 208 | S | A | -1.8349 | |
| 209 | N | A | -2.6018 | |
| 210 | T | A | -2.0702 | |
| 211 | K | A | -2.6601 | |
| 212 | V | A | -1.7082 | |
| 213 | D | A | -2.7880 | |
| 214 | K | A | -2.5050 | |
| 215 | R | A | -2.8863 | |
| 216 | V | A | 0.0000 | |
| 217 | E | A | -2.7817 | |
| 218 | S | A | -1.5399 |