Project name: 2b4ae3a38a6c02f

Status: done

Started: 2026-06-27 15:35:11
Settings
Chain sequence(s) A: GNNQQNY
C: GNNQQNY
B: GNNQQNY
E: GNNQQNY
D: GNNQQNY
G: GNNQQNY
F: GNNQQNY
I: GNNQQNY
H: GNNQQNY
K: GNNQQNY
J: GNNQQNY
M: GNNQQNY
L: GNNQQNY
O: GNNQQNY
N: GNNQQNY
Q: GNNQQNY
P: GNNQQNY
S: GNNQQNY
R: GNNQQNY
T: GNNQQNY
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:13)
Show buried residues

Minimal score value
-2.5934
Maximal score value
2.4153
Average score
-0.3884
Total score value
-54.3776

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.2701
2 N A -1.1975
3 N A -1.0037
4 Q A 0.0000
5 Q A 0.1043
6 N A 0.0000
7 Y A 2.1471
1 G B -1.2716
2 N B -1.1870
3 N B -1.0026
4 Q B 0.0000
5 Q B 0.1449
6 N B 0.0000
7 Y B 2.0460
1 G C -1.2714
2 N C -1.1941
3 N C -1.0088
4 Q C 0.0000
5 Q C 0.1733
6 N C 0.0000
7 Y C 2.2904
1 G D -1.2686
2 N D -1.3160
3 N D -1.1249
4 Q D 0.0000
5 Q D 0.1590
6 N D 0.0000
7 Y D 2.3306
1 G E -1.5581
2 N E -1.9355
3 N E -1.8403
4 Q E 0.0000
5 Q E -0.2948
6 N E 0.0000
7 Y E 2.1093
1 G F -1.7537
2 N F -2.5434
3 N F -2.5934
4 Q F -1.9616
5 Q F -0.9901
6 N F 0.0230
7 Y F 1.5352
1 G G -1.3308
2 N G -1.6798
3 N G -1.9525
4 Q G 0.0000
5 Q G -1.0163
6 N G 0.0000
7 Y G 1.5045
1 G H -1.3868
2 N H -1.4540
3 N H -1.5067
4 Q H 0.0000
5 Q H -0.2514
6 N H 0.0000
7 Y H 1.6964
1 G I -1.2665
2 N I -1.2416
3 N I -1.1077
4 Q I 0.0000
5 Q I 0.0880
6 N I 0.0000
7 Y I 2.2039
1 G J -1.2637
2 N J -1.2106
3 N J -1.0144
4 Q J 0.0000
5 Q J 0.2542
6 N J 0.0000
7 Y J 2.2288
1 G K -1.2687
2 N K -1.2090
3 N K -1.0165
4 Q K 0.0000
5 Q K 0.2574
6 N K 0.0000
7 Y K 2.4153
1 G L -1.2713
2 N L -1.2139
3 N L -1.0229
4 Q L 0.0000
5 Q L 0.2395
6 N L 0.0000
7 Y L 2.2552
1 G M -1.2680
2 N M -1.2100
3 N M -1.0246
4 Q M 0.0000
5 Q M 0.1795
6 N M 0.0000
7 Y M 2.2918
1 G N -1.4162
2 N N -1.3182
3 N N -1.0465
4 Q N 0.0000
5 Q N 0.1014
6 N N 0.0000
7 Y N 2.0516
1 G O -1.3112
2 N O -1.8712
3 N O -1.6689
4 Q O -1.4751
5 Q O -0.8462
6 N O -0.2644
7 Y O 1.5327
1 G P -1.7165
2 N P -1.9072
3 N P -1.6599
4 Q P 0.0000
5 Q P -0.5348
6 N P 0.0000
7 Y P 1.7739
1 G Q -1.5041
2 N Q -2.4374
3 N Q -1.9942
4 Q Q -1.8964
5 Q Q -1.2239
6 N Q -0.9541
7 Y Q 1.0633
1 G R -1.3963
2 N R -1.4330
3 N R -1.3145
4 Q R 0.0000
5 Q R -0.0958
6 N R 0.0000
7 Y R 2.0939
1 G S -1.3151
2 N S -1.2402
3 N S -1.0435
4 Q S 0.0000
5 Q S 0.1133
6 N S 0.0000
7 Y S 2.2927
1 G T -1.2700
2 N T -1.2004
3 N T -1.0022
4 Q T 0.0000
5 Q T 0.1300
6 N T 0.0000
7 Y T 1.9243
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Laboratory of Theory of Biopolymers 2018