| Chain sequence(s) |
A: GNNQQNY
C: GNNQQNY B: GNNQQNY E: GNNQQNY D: GNNQQNY G: GNNQQNY F: GNNQQNY I: GNNQQNY H: GNNQQNY K: GNNQQNY J: GNNQQNY M: GNNQQNY L: GNNQQNY O: GNNQQNY N: GNNQQNY Q: GNNQQNY P: GNNQQNY S: GNNQQNY R: GNNQQNY T: GNNQQNY input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:08)
[INFO] Main: Simulation completed successfully. (00:01:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.2701 | |
| 2 | N | A | -1.1975 | |
| 3 | N | A | -1.0037 | |
| 4 | Q | A | 0.0000 | |
| 5 | Q | A | 0.1043 | |
| 6 | N | A | 0.0000 | |
| 7 | Y | A | 2.1471 | |
| 1 | G | B | -1.2716 | |
| 2 | N | B | -1.1870 | |
| 3 | N | B | -1.0026 | |
| 4 | Q | B | 0.0000 | |
| 5 | Q | B | 0.1449 | |
| 6 | N | B | 0.0000 | |
| 7 | Y | B | 2.0460 | |
| 1 | G | C | -1.2714 | |
| 2 | N | C | -1.1941 | |
| 3 | N | C | -1.0088 | |
| 4 | Q | C | 0.0000 | |
| 5 | Q | C | 0.1733 | |
| 6 | N | C | 0.0000 | |
| 7 | Y | C | 2.2904 | |
| 1 | G | D | -1.2686 | |
| 2 | N | D | -1.3160 | |
| 3 | N | D | -1.1249 | |
| 4 | Q | D | 0.0000 | |
| 5 | Q | D | 0.1590 | |
| 6 | N | D | 0.0000 | |
| 7 | Y | D | 2.3306 | |
| 1 | G | E | -1.5581 | |
| 2 | N | E | -1.9355 | |
| 3 | N | E | -1.8403 | |
| 4 | Q | E | 0.0000 | |
| 5 | Q | E | -0.2948 | |
| 6 | N | E | 0.0000 | |
| 7 | Y | E | 2.1093 | |
| 1 | G | F | -1.7537 | |
| 2 | N | F | -2.5434 | |
| 3 | N | F | -2.5934 | |
| 4 | Q | F | -1.9616 | |
| 5 | Q | F | -0.9901 | |
| 6 | N | F | 0.0230 | |
| 7 | Y | F | 1.5352 | |
| 1 | G | G | -1.3308 | |
| 2 | N | G | -1.6798 | |
| 3 | N | G | -1.9525 | |
| 4 | Q | G | 0.0000 | |
| 5 | Q | G | -1.0163 | |
| 6 | N | G | 0.0000 | |
| 7 | Y | G | 1.5045 | |
| 1 | G | H | -1.3868 | |
| 2 | N | H | -1.4540 | |
| 3 | N | H | -1.5067 | |
| 4 | Q | H | 0.0000 | |
| 5 | Q | H | -0.2514 | |
| 6 | N | H | 0.0000 | |
| 7 | Y | H | 1.6964 | |
| 1 | G | I | -1.2665 | |
| 2 | N | I | -1.2416 | |
| 3 | N | I | -1.1077 | |
| 4 | Q | I | 0.0000 | |
| 5 | Q | I | 0.0880 | |
| 6 | N | I | 0.0000 | |
| 7 | Y | I | 2.2039 | |
| 1 | G | J | -1.2637 | |
| 2 | N | J | -1.2106 | |
| 3 | N | J | -1.0144 | |
| 4 | Q | J | 0.0000 | |
| 5 | Q | J | 0.2542 | |
| 6 | N | J | 0.0000 | |
| 7 | Y | J | 2.2288 | |
| 1 | G | K | -1.2687 | |
| 2 | N | K | -1.2090 | |
| 3 | N | K | -1.0165 | |
| 4 | Q | K | 0.0000 | |
| 5 | Q | K | 0.2574 | |
| 6 | N | K | 0.0000 | |
| 7 | Y | K | 2.4153 | |
| 1 | G | L | -1.2713 | |
| 2 | N | L | -1.2139 | |
| 3 | N | L | -1.0229 | |
| 4 | Q | L | 0.0000 | |
| 5 | Q | L | 0.2395 | |
| 6 | N | L | 0.0000 | |
| 7 | Y | L | 2.2552 | |
| 1 | G | M | -1.2680 | |
| 2 | N | M | -1.2100 | |
| 3 | N | M | -1.0246 | |
| 4 | Q | M | 0.0000 | |
| 5 | Q | M | 0.1795 | |
| 6 | N | M | 0.0000 | |
| 7 | Y | M | 2.2918 | |
| 1 | G | N | -1.4162 | |
| 2 | N | N | -1.3182 | |
| 3 | N | N | -1.0465 | |
| 4 | Q | N | 0.0000 | |
| 5 | Q | N | 0.1014 | |
| 6 | N | N | 0.0000 | |
| 7 | Y | N | 2.0516 | |
| 1 | G | O | -1.3112 | |
| 2 | N | O | -1.8712 | |
| 3 | N | O | -1.6689 | |
| 4 | Q | O | -1.4751 | |
| 5 | Q | O | -0.8462 | |
| 6 | N | O | -0.2644 | |
| 7 | Y | O | 1.5327 | |
| 1 | G | P | -1.7165 | |
| 2 | N | P | -1.9072 | |
| 3 | N | P | -1.6599 | |
| 4 | Q | P | 0.0000 | |
| 5 | Q | P | -0.5348 | |
| 6 | N | P | 0.0000 | |
| 7 | Y | P | 1.7739 | |
| 1 | G | Q | -1.5041 | |
| 2 | N | Q | -2.4374 | |
| 3 | N | Q | -1.9942 | |
| 4 | Q | Q | -1.8964 | |
| 5 | Q | Q | -1.2239 | |
| 6 | N | Q | -0.9541 | |
| 7 | Y | Q | 1.0633 | |
| 1 | G | R | -1.3963 | |
| 2 | N | R | -1.4330 | |
| 3 | N | R | -1.3145 | |
| 4 | Q | R | 0.0000 | |
| 5 | Q | R | -0.0958 | |
| 6 | N | R | 0.0000 | |
| 7 | Y | R | 2.0939 | |
| 1 | G | S | -1.3151 | |
| 2 | N | S | -1.2402 | |
| 3 | N | S | -1.0435 | |
| 4 | Q | S | 0.0000 | |
| 5 | Q | S | 0.1133 | |
| 6 | N | S | 0.0000 | |
| 7 | Y | S | 2.2927 | |
| 1 | G | T | -1.2700 | |
| 2 | N | T | -1.2004 | |
| 3 | N | T | -1.0022 | |
| 4 | Q | T | 0.0000 | |
| 5 | Q | T | 0.1300 | |
| 6 | N | T | 0.0000 | |
| 7 | Y | T | 1.9243 |