Project name: test

Status: done

Started: 2025-06-27 22:57:08
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Chain sequence(s) H: EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAILGATSLSAFDIWGQGTMVTVSS
L: EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPLTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:44)
Show buried residues

Minimal score value
-3.118
Maximal score value
1.2516
Average score
-0.6209
Total score value
-141.5732

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.0825
2 V H -1.1906
3 Q H -1.2458
4 L H 0.0000
5 L H 0.5836
6 E H 0.0000
7 S H -0.3494
8 G H -0.6631
9 G H -0.0670
10 G H 0.4608
11 L H 1.2516
12 V H -0.0318
13 Q H -1.3354
14 P H -1.6012
15 G H -1.4116
16 G H -0.9825
17 S H -1.0117
18 L H -0.5177
19 R H -1.1802
20 L H 0.0000
21 S H -0.2145
22 C H 0.0000
23 A H -0.1824
24 A H 0.0000
25 S H -0.8599
26 G H -1.2061
27 F H -0.4981
28 T H -0.2202
29 F H 0.0000
30 S H -0.5883
31 S H -0.2391
32 Y H 0.1312
33 A H 0.0103
34 M H 0.0000
35 S H 0.0000
36 W H 0.0000
37 V H 0.0000
38 R H 0.0000
39 Q H -0.7451
40 A H -1.1287
41 P H -0.9246
42 G H -1.4552
43 K H -2.3845
44 G H -1.5892
45 L H 0.0000
46 E H -0.9619
47 W H 0.0000
48 V H 0.0000
49 S H 0.0000
50 A H 0.0000
51 I H 0.0000
52 S H -0.1988
52A G H -0.4441
53 S H -0.6821
54 G H -0.7468
55 G H -0.6959
56 S H -0.1890
57 T H 0.3641
58 Y H 0.7180
59 Y H -0.3802
60 A H -1.1808
61 D H -2.3757
62 S H -1.7347
63 V H 0.0000
64 K H -2.4288
65 G H -1.7237
66 R H -1.4273
67 F H 0.0000
68 T H -0.5621
69 I H 0.0000
70 S H -0.3952
71 R H -0.9945
72 D H -1.5061
73 N H -1.7248
74 S H -1.5723
75 K H -2.3326
76 N H -1.6912
77 T H -0.9901
78 L H 0.0000
79 Y H -0.2747
80 L H 0.0000
81 Q H -0.7378
82 M H 0.0000
82A N H -1.1560
82B S H -1.2136
82C L H 0.0000
83 R H -2.1558
84 A H -1.6416
85 E H -2.1934
86 D H 0.0000
87 T H -0.5044
88 A H 0.0000
89 V H 0.3571
90 Y H 0.0000
91 Y H 0.0000
92 C H 0.0000
93 A H 0.0000
94 I H 0.0000
95 L H 0.0329
96 G H -0.2001
97 A H -0.0803
98 T H -0.0448
99 S H -0.0397
100 L H 0.1102
100A S H -0.0174
100B A H 0.0000
100C F H 0.0000
101 D H -0.9571
102 I H -0.3340
103 W H -0.4963
104 G H 0.0000
105 Q H -1.3230
106 G H -0.4498
107 T H 0.0301
108 M H 0.6425
109 V H 0.0000
110 T H 0.1317
111 V H 0.0000
112 S H -0.7214
113 S H -0.5639
1 E L -1.6135
2 I L 0.0000
3 V L 0.6394
4 L L 0.0000
5 T L -0.7854
6 Q L 0.0000
7 S L -1.0031
8 P L -0.6585
9 G L -1.1199
10 T L -1.0424
11 L L -0.7753
12 S L -0.7784
13 L L -1.0831
14 S L -1.5331
15 P L -1.5531
16 G L -1.8048
17 E L -2.4393
18 R L -2.9788
19 A L 0.0000
20 T L -0.7905
21 L L 0.0000
22 S L -0.9066
23 C L 0.0000
24 R L -2.3553
25 A L 0.0000
26 S L -1.0317
27 Q L -1.7479
28 S L -1.4250
29 V L 0.0000
30 S L -0.5204
30A S L -0.5178
31 S L -0.0965
32 Y L 0.2694
33 L L 0.0000
34 A L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L 0.0000
39 K L -1.2122
40 P L -0.8128
41 G L -1.4113
42 Q L -2.0600
43 A L -1.3324
44 P L 0.0000
45 R L -1.7123
46 L L 0.0000
47 L L 0.0000
48 I L 0.0000
49 Y L -0.1914
50 G L -0.1975
51 A L 0.0000
52 S L -0.7166
53 S L -0.8524
54 R L -1.7462
55 A L 0.0000
56 T L -0.6931
57 G L -0.8715
58 I L -1.0877
59 P L -1.3083
60 D L -2.4137
61 R L -1.9129
62 F L 0.0000
63 S L -0.9671
64 G L 0.0000
65 S L -0.6588
66 G L -1.1043
67 S L -1.0633
68 G L -1.2279
69 T L -1.8058
70 D L -2.2068
71 F L 0.0000
72 T L -0.7646
73 L L 0.0000
74 T L -0.8023
75 I L 0.0000
76 S L -2.2780
77 R L -3.1180
78 L L 0.0000
79 E L -1.6066
80 P L -1.3947
81 E L -1.6000
82 D L 0.0000
83 F L 0.0013
84 A L 0.0000
85 V L -0.5931
86 Y L 0.0000
87 Y L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 Q L 0.0000
91 Y L 0.0000
92 G L -0.3436
93 S L -0.6485
94 S L -0.4961
95 P L -0.7350
96 L L -0.0446
97 T L -0.1192
98 F L 0.0778
99 G L 0.0000
100 Q L -1.4129
101 G L 0.0000
102 T L 0.0000
103 K L -1.6189
104 V L 0.0000
105 E L -1.1028
106 I L -0.9852
107 K L -1.6442
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Laboratory of Theory of Biopolymers 2018