Project name: 2c579cdf4c75e2a

Status: done

Started: 2025-06-03 05:15:03
Settings
Chain sequence(s) H: QVKLQQSGAELVGSGASVKLSCTTSGFNIKDFYMHWVKQRPEQGLEWIGWIDPENGDSDYAPKFQGKATMTADSSSNTAYLQLSSLTSEDTAVYYCNAYYGDYEGYWGQGTTVTVSS
L: DIELTQSPAIMSASPGEKVTITCSASSSVSYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPFTFGSGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:41)
Show buried residues

Minimal score value
-3.5674
Maximal score value
1.5274
Average score
-0.5812
Total score value
-129.6065

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5546
2 V H -1.3703
3 K H -1.8230
4 L H 0.0000
5 Q H -1.4520
6 Q H -1.0232
7 S H -0.8585
8 G H -0.8465
9 A H 0.0203
11 E H 0.2181
12 L H 1.3672
13 V H 0.5886
14 G H -0.2388
15 S H -0.5435
16 G H -0.7964
17 A H -0.4463
18 S H -0.7011
19 V H -0.5001
20 K H -1.2895
21 L H 0.0000
22 S H -0.4733
23 C H 0.0000
24 T H -0.6578
25 T H 0.0000
26 S H -1.2590
27 G H -1.2992
28 F H -1.3638
29 N H -2.1204
30 I H 0.0000
35 K H -3.3120
36 D H -1.8602
37 F H -0.4587
38 Y H 0.3942
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -1.0163
45 R H -1.6373
46 P H -1.5623
47 E H -2.4732
48 Q H -2.1547
49 G H -1.3791
50 L H 0.0000
51 E H -1.3961
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 W H -0.1168
56 I H 0.0000
57 D H 0.0000
58 P H 0.0000
59 E H -3.5674
62 N H -3.1362
63 G H -2.6906
64 D H -2.7755
65 S H -1.2798
66 D H -0.8182
67 Y H -0.6506
68 A H 0.0000
69 P H -1.6911
70 K H -2.3445
71 F H 0.0000
72 Q H -2.0813
74 G H -1.4591
75 K H -1.3665
76 A H 0.0000
77 T H -0.7340
78 M H 0.0000
79 T H -0.5854
80 A H -0.9695
81 D H -1.1949
82 S H -1.6028
83 S H -0.9099
84 S H -0.7049
85 N H -1.1664
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2387
89 L H 0.0000
90 Q H -1.0474
91 L H 0.0000
92 S H -0.7643
93 S H -0.6575
94 L H 0.0000
95 T H -1.0329
96 S H -1.2306
97 E H -1.9624
98 D H 0.0000
99 T H -0.5778
100 A H 0.0000
101 V H 0.0144
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 N H 0.0000
106 A H 0.0000
107 Y H 0.7068
108 Y H 0.8556
109 G H -0.5603
113 D H -1.2912
114 Y H 0.2400
115 E H -0.3242
116 G H 0.0808
117 Y H -0.1072
118 W H -0.5724
119 G H 0.0000
120 Q H -1.6000
121 G H -0.7835
122 T H 0.0000
123 T H -0.0349
124 V H 0.0000
125 T H 0.2023
126 V H 0.0000
127 S H -0.0738
128 S H -0.2090
1 D L -2.0359
2 I L -1.5961
3 E L -2.3216
4 L L 0.0000
5 T L -0.6844
6 Q L 0.0000
7 S L 0.0158
8 P L 0.3807
9 A L 0.6915
10 I L 1.5274
11 M L 0.5167
12 S L -0.4900
13 A L 0.0000
14 S L -1.8384
15 P L -2.0707
16 G L -2.3475
17 E L -2.8487
18 K L -2.9822
19 V L 0.0000
20 T L -0.5786
21 I L 0.0000
22 T L -0.2351
23 C L 0.0000
24 S L -0.6777
25 A L 0.0000
26 S L -1.1973
27 S L -0.9236
28 S L -0.3775
29 V L 0.0000
37 S L 0.1404
38 Y L 0.9289
39 M L 0.0000
40 H L 0.1588
41 W L 0.0000
42 F L 0.0000
43 Q L 0.0000
44 Q L -0.8062
45 K L -1.0283
46 P L -0.6907
47 G L -0.8807
48 T L -0.9175
49 S L -0.7962
50 P L 0.0000
51 K L -1.0945
52 L L -0.3589
53 W L 0.0000
54 I L 0.0000
55 Y L -0.0557
56 S L 0.1953
57 T L 0.0300
65 S L -0.3864
66 N L -0.8482
67 L L 0.0743
68 A L -0.3140
69 S L -0.2947
70 G L -0.3661
71 V L 0.0000
72 P L -0.1683
74 A L -0.0961
75 R L -1.0527
76 F L 0.0000
77 S L -0.3834
78 G L -0.4176
79 S L -0.4074
80 G L -0.4487
83 S L -0.3686
84 G L -0.3989
85 T L -0.4072
86 S L -0.5554
87 Y L 0.0000
88 S L -0.3243
89 L L 0.0000
90 T L -0.7519
91 I L 0.0000
92 S L -2.0739
93 R L -3.3648
94 M L 0.0000
95 E L -2.2391
96 A L -1.4422
97 E L -1.6933
98 D L 0.0000
99 A L -1.2082
100 A L 0.0000
101 T L -0.4686
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 R L 0.0665
108 S L 0.1220
109 S L -0.0805
114 Y L 0.4738
115 P L -0.1533
116 F L -0.1886
117 T L -0.7840
118 F L 0.0000
119 G L 0.0000
120 S L -0.8783
121 G L 0.0000
122 T L 0.0000
123 K L -0.4026
124 L L 0.0000
125 E L -1.0204
126 I L -1.2191
127 K L -1.7954
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Laboratory of Theory of Biopolymers 2018