Project name: 4XXD

Status: done

Started: 2026-03-23 06:49:16
Settings
Chain sequence(s) A: DVVMTQSPLSLPVTLGQPASISCRSSQSLIYSDGNAYLHWFLQKPGQSPRLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCSQSTHVPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
C: KLVFFAEDVGS
B: VQLVESGGGLVQPGGSLRLSCAASGFTFSRYSMSWVRQAPGKGLELVAQINSVGSSTYYPDTVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCASGDYWGQGTLVTVSSASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
E: VQLVESGGGLVQPGGSLRLSCAASGFTFSRYSMSWVRQAPGKGLELVAQINSVGSSTYYPDTVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCASGDYWGQGTLVTVSSASTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
D: DVVMTQSPLSLPVTLGQPASISCRSSQSLIYSDGNAYLHWFLQKPGQSPRLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCSQSTHVPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
F: KLVFFAEDV
input PDB
Selected Chain(s) A,C,B,E,D,F
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:08:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:28)
Show buried residues

Minimal score value
-3.5254
Maximal score value
1.1539
Average score
-0.6285
Total score value
-544.9409

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.3557
2 V A 0.0000
3 V A 0.7168
4 M A 0.0000
5 T A -0.6608
6 Q A 0.0000
7 S A -0.3163
8 P A -0.0768
9 L A 0.3347
10 S A -0.2798
11 L A -0.5291
12 P A -1.0518
13 V A 0.0000
14 T A -1.1230
15 L A -0.5749
16 G A -1.2693
17 Q A -1.7768
18 P A -1.8431
19 A A 0.0000
20 S A -0.7886
21 I A 0.0000
22 S A -1.0210
23 C A 0.0000
24 R A -2.4182
25 S A 0.0000
26 S A -0.9452
27 Q A -1.2030
27A S A -0.4371
27B L A 0.0000
27C I A 1.0104
27D Y A 0.0789
27E S A -0.4708
28 D A -1.3129
29 G A -0.8837
30 N A -0.7352
31 A A 0.0000
32 Y A 0.0000
33 L A 0.0000
34 H A 0.0000
35 W A 0.0000
36 F A 0.0000
37 L A 0.0000
38 Q A 0.0000
39 K A -1.6651
40 P A -1.2324
41 G A -1.3565
42 Q A -2.0864
43 S A -1.5243
44 P A 0.0000
45 R A -1.9299
46 L A 0.0000
47 L A 0.0000
48 I A 0.0000
49 Y A -0.5057
50 K A -0.9590
51 V A -0.7525
52 S A -1.1429
53 N A -1.8312
54 R A -1.9305
55 F A -0.9652
56 S A -0.6683
57 G A -0.7664
58 V A -1.0421
59 P A -1.2309
60 D A -2.1818
61 R A -2.0250
62 F A 0.0000
63 S A -1.5677
64 G A -1.0860
65 S A -1.0819
66 G A -1.2377
67 S A -0.8866
68 G A -0.9217
69 T A -1.7538
70 D A -2.8248
71 F A 0.0000
72 T A -1.2355
73 L A 0.0000
74 K A -1.8947
75 I A 0.0000
76 S A -2.2681
77 R A -2.7457
78 V A 0.0000
79 E A -2.1561
80 A A -1.9648
81 E A -2.3787
82 D A 0.0000
83 V A 0.0000
84 G A 0.0000
85 V A -0.5436
86 Y A 0.0000
87 Y A 0.0000
88 C A 0.0000
89 S A 0.0000
90 Q A 0.0000
91 S A 0.0000
92 T A 0.0000
93 H A -0.6159
94 V A 0.2300
95 P A 0.2026
96 W A 0.0000
97 T A 0.0340
98 F A -0.0052
99 G A 0.0000
100 Q A -1.2955
101 G A 0.0000
102 T A 0.0000
103 K A -1.2547
104 V A 0.0000
105 E A -1.4054
106 I A 0.0000
107 K A -1.4726
108 R A -0.8613
109 T A -0.0413
110 V A 0.5804
111 A A 0.1687
112 A A -0.1001
113 P A 0.0000
114 S A -0.1268
115 V A 0.0000
116 F A 0.1269
117 I A 0.0991
118 F A 0.0000
119 P A -0.6115
120 P A -0.6512
121 S A -1.4232
122 D A -2.6802
123 E A -2.5335
124 Q A 0.0000
125 L A -2.0697
126 K A -2.6396
127 S A -1.6059
128 G A -1.3677
129 T A -1.0447
130 A A 0.0000
131 S A 0.0000
132 V A 0.0000
133 V A 0.0000
134 C A 0.0000
135 L A 0.0000
136 L A 0.0000
137 N A 0.0000
138 N A -0.9007
139 F A 0.0000
140 Y A 0.0000
141 P A -1.6370
142 R A -2.6789
143 E A -3.0959
144 A A -2.2856
145 K A -2.3328
146 V A -1.2335
147 Q A -0.8454
148 W A 0.0000
149 K A -0.8186
150 V A 0.0000
151 D A -1.7444
152 N A -1.4352
153 A A -0.4490
154 L A 0.2388
155 Q A -0.2915
156 S A -0.5007
157 G A -0.8667
158 N A -0.7671
159 S A -1.1012
160 Q A -1.3411
161 E A -1.9249
162 S A -0.9596
163 V A -0.7185
164 T A -0.8986
165 E A -1.7921
166 Q A 0.0000
167 D A -1.9638
168 S A -2.2692
169 K A -2.6205
170 D A -1.7459
171 S A 0.0000
172 T A 0.0000
173 Y A 0.0000
174 S A 0.0000
175 L A 0.0000
176 S A 0.0000
177 S A 0.0000
178 T A -0.6500
179 L A 0.0000
180 T A -0.4755
181 L A -0.7655
182 S A -1.1711
183 K A -2.1358
184 A A -2.0423
185 D A -2.9673
186 Y A 0.0000
187 E A -3.2566
188 K A -3.5254
189 H A -3.0167
190 K A -2.7457
191 V A -1.3213
192 Y A 0.0000
193 A A 0.0000
194 C A 0.0000
195 E A -1.0008
196 V A 0.0000
197 T A -1.3098
198 H A 0.0000
199 Q A -1.7339
200 G A -0.4285
201 L A -0.2606
202 S A -0.4755
203 S A -0.4417
204 P A -0.6064
205 V A -0.0870
206 T A -0.5899
207 K A -0.7720
208 S A -0.5593
209 F A -0.7613
210 N A -1.6174
211 R A -2.2889
212 G A -2.1059
213 E A -2.2372
2 V B 0.9398
3 Q B -0.2893
4 L B 0.0000
5 V B 0.4263
6 E B -0.1195
7 S B -0.4791
8 G B -0.9739
9 G B -0.3570
10 G B 0.0720
11 L B -0.1498
12 V B 0.0000
13 Q B -1.4167
14 P B -1.1683
15 G B -1.2292
16 G B 0.0000
17 S B -0.9709
18 L B -1.0529
19 R B -1.9007
20 L B 0.0000
21 S B -0.5114
22 C B 0.0000
23 A B 0.0151
24 A B 0.0000
25 S B -0.0688
26 G B -0.1946
27 F B 0.0000
28 T B -0.6997
29 F B 0.0000
30 S B -0.9669
31 R B -1.5651
32 Y B -0.7100
33 S B 0.0000
34 M B 0.0000
35 S B 0.0000
36 W B 0.0000
37 V B 0.0000
38 R B 0.0000
39 Q B -0.8998
40 A B -1.1646
41 P B -1.0346
42 G B -1.4814
43 K B -2.4325
44 G B -1.6923
45 L B 0.0000
46 E B -1.5870
47 L B 0.0000
48 V B 0.0000
49 A B 0.0000
50 Q B 0.0000
51 I B 0.0000
52 N B -0.3692
52A S B -0.3466
53 V B 0.9674
54 G B 0.1729
55 S B 0.0025
56 S B -0.0069
57 T B 0.0369
58 Y B 0.1057
59 Y B -0.6789
60 P B -1.4357
61 D B -2.4506
62 T B -1.6422
63 V B 0.0000
64 K B -2.5468
65 G B -1.7365
66 R B -1.4459
67 F B 0.0000
68 T B -0.7703
69 I B 0.0000
70 S B -0.2909
71 R B -0.5079
72 D B -0.9499
73 N B -0.9450
74 A B -0.7745
75 K B -1.0248
76 N B -0.9348
77 T B -0.5204
78 L B 0.0000
79 Y B -0.5871
80 L B 0.0000
81 Q B -1.2008
82 M B 0.0000
82A N B -1.3702
82B S B -1.0954
82C L B 0.0000
83 R B -2.1976
84 A B -1.6173
85 E B -2.2219
86 D B 0.0000
87 T B -0.5951
88 A B 0.0000
89 V B 0.4852
90 Y B 0.0000
91 Y B 0.0000
92 C B 0.0000
93 A B 0.0000
94 S B 0.0000
95 G B 0.0000
96 D B 0.0000
97 Y B -0.1165
98 W B -0.2886
99 G B 0.0000
100 Q B -1.1673
101 G B -0.3476
102 T B 0.2675
103 L B 0.9166
104 V B 0.0000
105 T B -0.2641
106 V B 0.0000
107 S B -0.5665
108 S B -0.7886
109 A B -0.5385
110 S B -0.9671
111 T B 0.0000
112 K B -1.1558
113 G B -1.1106
114 P B -0.5168
115 S B -0.1885
116 V B 0.0000
117 F B -0.5631
118 P B -0.9684
119 L B 0.0000
120 A B -0.7825
121 P B 0.0000
122 S B -0.3276
123 S B -0.3335
129 G B -0.6772
130 T B -0.4977
131 A B -0.3196
132 A B 0.0000
133 L B 0.0000
134 G B 0.0000
135 C B 0.0000
136 L B 0.0000
137 V B 0.0000
138 K B 0.0000
139 D B -0.3825
140 Y B 0.0000
141 F B 0.0000
142 P B 0.0000
143 E B -1.0331
144 P B -0.9755
145 V B -0.8202
146 T B -0.6169
147 V B -0.1790
148 S B -0.3487
149 W B 0.0000
150 N B -0.6997
151 S B -0.6119
152 G B -0.5016
153 A B -0.2111
154 L B 0.0180
155 T B -0.1800
156 S B -0.2167
157 G B -0.2774
158 V B 0.1159
159 H B -0.2884
160 T B -0.0135
161 F B 0.0000
162 P B -0.3439
163 A B 0.0319
164 V B 0.4267
165 L B 0.8670
166 Q B 0.1938
167 S B -0.1163
168 S B -0.2526
169 G B -0.0155
170 L B 0.0180
171 Y B 0.1910
172 S B 0.0000
173 L B 0.0000
174 S B 0.0000
175 S B 0.0000
176 V B 0.0000
177 V B 0.0000
178 T B -0.1623
179 V B 0.0000
180 P B -0.5357
181 S B -0.6652
182 S B -0.6596
183 S B -0.6419
184 L B -0.8144
185 G B -0.9611
186 T B -0.7008
187 Q B -1.0917
188 T B -1.0160
189 Y B 0.0000
190 I B -1.1218
191 C B 0.0000
192 N B -1.5132
193 V B 0.0000
194 N B -1.5328
195 H B 0.0000
196 K B -2.2732
197 P B -1.2437
198 S B 0.0000
199 N B 0.0000
200 T B -1.5082
201 K B -2.4558
202 V B -1.7261
203 D B -2.6390
204 K B -2.1446
205 K B -2.4981
206 V B 0.0000
207 E B -2.4523
208 P B -1.2190
16 K C -0.0396
17 L C 0.4593
18 V C 0.2384
19 F C 0.0000
20 F C 0.0000
21 A C 0.0000
22 E C -1.6080
23 D C 0.0000
24 V C -0.3430
25 G C -0.9141
26 S C -0.8631
1 D D -1.2328
2 V D 0.0000
3 V D 0.6498
4 M D 0.0000
5 T D -0.6314
6 Q D 0.0000
7 S D -0.2044
8 P D 0.2926
9 L D 1.0454
10 S D 0.4117
11 L D 0.0796
12 P D -0.3614
13 V D 0.0000
14 T D -1.0887
15 L D -0.7092
16 G D -1.6134
17 Q D -1.9225
18 P D -1.7667
19 A D 0.0000
20 S D -0.8219
21 I D 0.0000
22 S D -0.9442
23 C D 0.0000
24 R D -2.3268
25 S D -1.1952
26 S D -1.1455
27 Q D -1.4640
27A S D -0.5850
27B L D 0.0000
27C I D 0.7498
27D Y D -0.0433
27E S D -0.6153
28 D D -1.5977
29 G D -0.9238
30 N D -0.6472
31 A D -0.0061
32 Y D 0.0000
33 L D 0.0000
34 H D 0.0000
35 W D 0.0000
36 F D 0.0000
37 L D 0.0000
38 Q D -1.2186
39 K D -1.5989
40 P D -1.6060
41 G D -1.5072
42 Q D -2.1166
43 S D -1.5427
44 P D 0.0000
45 R D -1.9383
46 L D 0.0000
47 L D 0.0000
48 I D 0.0000
49 Y D -0.2583
50 K D -0.5370
51 V D -0.5223
52 S D -0.8433
53 N D -1.2686
54 R D -1.8334
55 F D -0.8217
56 S D -0.5187
57 G D -0.7965
58 V D -1.0171
59 P D -1.2697
60 D D -2.1857
61 R D -1.9883
62 F D 0.0000
63 S D -1.5191
64 G D -1.0371
65 S D -0.9286
66 G D -1.0712
67 S D -0.8773
68 G D -0.9470
69 T D -1.6126
70 D D -2.1509
71 F D 0.0000
72 T D -1.1567
73 L D 0.0000
74 K D -2.0010
75 I D 0.0000
76 S D -2.2643
77 R D -2.9173
78 V D 0.0000
79 E D -2.5392
80 A D -2.1494
81 E D -2.6217
82 D D 0.0000
83 V D 0.0000
84 G D 0.0000
85 V D -0.0772
86 Y D 0.0000
87 Y D 0.0000
88 C D 0.0000
89 S D 0.0000
90 Q D 0.0000
91 S D 0.0000
92 T D 0.0000
93 H D 0.1035
94 V D 1.1539
95 P D 0.5635
96 W D 0.0000
97 T D 0.0314
98 F D 0.0096
99 G D 0.0000
100 Q D -1.0959
101 G D 0.0000
102 T D 0.0000
103 K D -0.2656
104 V D 0.0000
105 E D 0.0000
106 I D 0.0000
107 K D -1.2807
108 R D -0.8655
109 T D -0.0288
110 V D 0.6980
111 A D 0.1553
112 A D -0.0462
113 P D 0.0000
114 S D -0.2428
115 V D 0.0000
116 F D 0.1408
117 I D 0.1483
118 F D 0.0000
119 P D -0.6152
120 P D 0.0000
121 S D -1.4616
122 D D -2.5186
123 E D -2.0878
124 Q D 0.0000
125 L D -2.0432
126 K D -2.5458
127 S D -1.6245
128 G D -1.0595
129 T D -0.8199
130 A D 0.0000
131 S D 0.0000
132 V D 0.0000
133 V D 0.0000
134 C D 0.0000
135 L D 0.0000
136 L D 0.0000
137 N D -0.3804
138 N D -0.8251
139 F D 0.0000
140 Y D -0.7496
141 P D -1.2172
142 R D -2.0271
143 E D -2.6342
144 A D -1.9169
145 K D -1.9558
146 V D -0.9948
147 Q D -0.7092
148 W D 0.0000
149 K D -0.6807
150 V D 0.0000
151 D D -1.6585
152 N D -1.4337
153 A D -0.2742
154 L D 0.3978
155 Q D -0.4853
156 S D -0.7839
157 G D -1.3165
158 N D -1.6903
159 S D -1.4636
160 Q D -1.3184
161 E D -1.2887
162 S D -0.5716
163 V D -0.4983
164 T D 0.0000
165 E D -2.0798
166 Q D 0.0000
167 D D -1.9621
168 S D -2.3250
169 K D -2.5504
170 D D -1.9021
171 S D 0.0000
172 T D 0.0000
173 Y D 0.0000
174 S D 0.0000
175 L D 0.0000
176 S D 0.0000
177 S D 0.0000
178 T D -0.6957
179 L D 0.0000
180 T D -0.5156
181 L D -0.6926
182 S D -0.9603
183 K D -2.0333
184 A D -1.7078
185 D D -2.2731
186 Y D 0.0000
187 E D -3.3611
188 K D -3.4343
189 H D -2.9094
190 K D -3.1849
191 V D -1.4569
192 Y D 0.0000
193 A D 0.0000
194 C D 0.0000
195 E D -0.7596
196 V D 0.0000
197 T D -1.1370
198 H D 0.0000
199 Q D -1.5427
200 G D -0.3458
201 L D -0.2430
202 S D -0.4540
203 S D -0.4544
204 P D -0.5263
205 V D -0.0794
206 T D -0.4793
207 K D -0.6553
208 S D -0.5796
209 F D -0.9521
210 N D -2.1362
211 R D -2.2794
212 G D -1.4109
2 V E 0.8630
3 Q E -0.3005
4 L E 0.0000
5 V E 0.4463
6 E E 0.0000
7 S E -0.5773
8 G E -1.0236
9 G E -0.5210
10 G E -0.0467
11 L E -0.1877
12 V E 0.0000
13 Q E -1.3185
14 P E -1.1703
15 G E -1.2355
16 G E 0.0000
17 S E -1.0474
18 L E -1.1121
19 R E -2.1207
20 L E 0.0000
21 S E -0.4821
22 C E 0.0000
23 A E -0.0814
24 A E 0.0000
25 S E -0.2338
26 G E -0.3201
27 F E 0.0000
28 T E -0.7543
29 F E 0.0000
30 S E -0.9696
31 R E -1.4702
32 Y E 0.0000
33 S E 0.0000
34 M E 0.0000
35 S E 0.0000
36 W E 0.0000
37 V E 0.0000
38 R E 0.0000
39 Q E -0.8473
40 A E -1.1632
41 P E -0.9824
42 G E -1.4653
43 K E -2.4251
44 G E -1.6557
45 L E 0.0000
46 E E -1.4827
47 L E 0.0000
48 V E 0.0000
49 A E 0.0000
50 Q E 0.0000
51 I E 0.0000
52 N E -0.2200
52A S E -0.3341
53 V E 0.9058
54 G E 0.1479
55 S E 0.0153
56 S E 0.0605
57 T E 0.0938
58 Y E 0.2475
59 Y E -0.6495
60 P E -1.6086
61 D E -2.4419
62 T E -1.6421
63 V E 0.0000
64 K E -2.5437
65 G E -1.7555
66 R E -1.4945
67 F E 0.0000
68 T E -0.8047
69 I E 0.0000
70 S E -0.2740
71 R E -0.5677
72 D E -1.0141
73 N E -0.9678
74 A E -0.7372
75 K E -1.1481
76 N E -1.0936
77 T E 0.0000
78 L E 0.0000
79 Y E -0.5778
80 L E 0.0000
81 Q E -1.2562
82 M E 0.0000
82A N E -1.4586
82B S E -1.1601
82C L E 0.0000
83 R E -2.1078
84 A E -1.5662
85 E E -2.1711
86 D E 0.0000
87 T E -0.6606
88 A E 0.0000
89 V E 0.3930
90 Y E 0.0000
91 Y E 0.0000
92 C E 0.0000
93 A E 0.0000
94 S E 0.0000
95 G E 0.0000
96 D E 0.0000
97 Y E -0.0122
98 W E -0.2980
99 G E 0.0000
100 Q E -1.2401
101 G E -0.4177
102 T E -0.0099
103 L E 0.3358
104 V E 0.0000
105 T E 0.0000
106 V E 0.0000
107 S E -0.5289
108 S E -0.7442
109 A E -0.5020
110 S E -0.9217
111 T E 0.0000
112 K E -1.0763
113 G E -1.2054
114 P E 0.0000
115 S E -0.3218
116 V E 0.0000
117 F E -0.5316
118 P E -0.9615
119 L E 0.0000
120 A E -1.1549
121 P E 0.0000
122 S E -0.7033
129 G E -0.6727
130 T E -0.5261
131 A E -0.2420
132 A E 0.0000
133 L E 0.0000
134 G E 0.0000
135 C E 0.0000
136 L E 0.0000
137 V E 0.0000
138 K E -0.2707
139 D E -0.5195
140 Y E 0.0000
141 F E 0.0000
142 P E 0.0000
143 E E -0.3156
144 P E -0.7200
145 V E -0.7387
146 T E -0.7176
147 V E -0.3269
148 S E -0.4484
149 W E 0.0000
150 N E -0.7309
151 S E -0.6439
152 G E -0.4006
153 A E -0.1984
154 L E -0.0606
155 T E -0.2099
156 S E -0.2825
157 G E -0.4080
158 V E 0.0456
159 H E -0.3663
160 T E -0.1985
161 F E 0.0000
162 P E -0.2379
163 A E 0.2723
164 V E 0.5407
165 L E 0.9671
166 Q E 0.1676
167 S E -0.1125
168 S E -0.2617
169 G E -0.0105
170 L E 0.0955
171 Y E 0.3643
172 S E 0.0000
173 L E 0.0000
174 S E 0.0000
175 S E 0.0000
176 V E 0.0000
177 V E 0.0000
178 T E -0.2177
179 V E 0.0000
180 P E -0.5389
181 S E -0.5481
182 S E -0.6306
183 S E -0.6636
184 L E -0.6559
185 G E -1.0143
186 T E -0.8086
187 Q E -1.2943
188 T E -1.1900
189 Y E 0.0000
190 I E -1.3082
191 C E 0.0000
192 N E -1.6392
193 V E 0.0000
194 N E -1.9687
195 H E 0.0000
196 K E -2.3382
197 P E -1.1696
198 S E 0.0000
199 N E -1.6421
200 T E -1.6394
201 K E -2.6414
202 V E -1.7026
203 D E -2.6694
204 K E -2.2127
205 K E -2.6179
206 V E 0.0000
207 E E -2.7765
208 P E -1.8537
209 K E -2.2646
16 K F -0.1425
17 L F 0.1475
18 V F 0.2805
19 F F 0.0000
20 F F 0.0000
21 A F 0.0000
22 E F -0.2043
23 D F -0.1180
24 V F 0.9652
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Laboratory of Theory of Biopolymers 2018