| Chain sequence(s) |
A: FFGHKGF
C: FFGHKGF B: FFGHKGF D: FFGHKGF input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:23)
[INFO] Main: Simulation completed successfully. (00:00:24)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 4.2051 | |
| 2 | F | A | 3.4025 | |
| 3 | G | A | 0.7724 | |
| 4 | H | A | 0.4318 | |
| 5 | K | A | -1.3939 | |
| 6 | G | A | -0.0864 | |
| 7 | F | A | 2.0298 | |
| 1 | F | B | 4.3110 | |
| 2 | F | B | 3.5933 | |
| 3 | G | B | 1.0291 | |
| 4 | H | B | 0.5277 | |
| 5 | K | B | -1.3258 | |
| 6 | G | B | -0.2246 | |
| 7 | F | B | 1.8020 | |
| 1 | F | C | 4.2205 | |
| 2 | F | C | 3.5938 | |
| 3 | G | C | 1.1092 | |
| 4 | H | C | 0.7132 | |
| 5 | K | C | -0.9740 | |
| 6 | G | C | 0.0758 | |
| 7 | F | C | 2.2722 | |
| 1 | F | D | 4.3297 | |
| 2 | F | D | 3.6390 | |
| 3 | G | D | 1.1176 | |
| 4 | H | D | 0.6252 | |
| 5 | K | D | -1.1379 | |
| 6 | G | D | 0.0000 | |
| 7 | F | D | 1.9504 |