Project name: 2c891f82cf97e14

Status: done

Started: 2025-06-03 05:14:32
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTNYWMNWVRQAPRQGLEWMGMFHPTGDVTRLNQKFKDRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARTTSMIIGGFAYWGQGTLVTVSS
L: DIVMTQTPLSLSVTPGQPASISCRSSKSLLHRNAITYFYWYLHKPGQPPQLLIYQMSNLASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCAQNLELPLTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:47)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:50)
Show buried residues

Minimal score value
-3.167
Maximal score value
2.6106
Average score
-0.502
Total score value
-116.4614

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3440
2 V H -0.5381
3 Q H -0.7788
4 L H 0.0000
5 V H 0.6378
6 Q H 0.0000
7 S H -0.4262
8 G H -0.4025
9 A H 0.3087
11 E H 0.0692
12 V H 0.9887
13 K H -1.0083
14 K H -2.1981
15 P H -2.0962
16 G H -1.6191
17 A H -1.2918
18 S H -1.3811
19 V H 0.0000
20 K H -1.9521
21 V H 0.0000
22 S H -0.5284
23 C H 0.0000
24 K H -0.6945
25 A H 0.0000
26 S H -0.6506
27 G H -0.8754
28 Y H -0.4547
29 T H -0.3432
30 F H 0.0000
35 T H -0.6277
36 N H -0.8813
37 Y H -0.1146
38 W H 0.2684
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6818
45 A H -1.2660
46 P H -1.7112
47 R H -2.6424
48 Q H -2.3999
49 G H -1.3671
50 L H 0.0000
51 E H -0.6257
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 M H 0.0884
56 F H 0.0000
57 H H -0.2940
58 P H 0.0000
59 T H -0.5914
62 G H -0.6783
63 D H -1.0560
64 V H 0.7924
65 T H 0.0788
66 R H -0.5268
67 L H -1.0706
68 N H -1.6036
69 Q H -2.7339
70 K H -2.9533
71 F H 0.0000
72 K H -3.1670
74 D H -3.0533
75 R H -2.1213
76 V H 0.0000
77 T H -0.9593
78 M H 0.0000
79 T H -0.4692
80 R H -1.1736
81 D H -1.0350
82 T H -0.5805
83 S H -0.4716
84 T H -0.5713
85 S H -0.6521
86 T H 0.0000
87 V H 0.0000
88 Y H -0.6043
89 M H 0.0000
90 E H -1.2249
91 L H 0.0000
92 S H -1.3207
93 S H -1.4363
94 L H 0.0000
95 R H -3.1498
96 S H -2.3801
97 E H -2.5960
98 D H 0.0000
99 T H -0.7170
100 A H 0.0000
101 V H 0.7130
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 T H 0.0000
108 T H 0.8663
109 S H 0.7773
110 M H 1.9082
111 I H 2.6106
112 I H 1.5289
113 G H 0.8302
114 G H 0.0000
115 F H 0.0000
116 A H 0.3288
117 Y H 0.4443
118 W H 0.0690
119 G H 0.0000
120 Q H -0.9532
121 G H -0.2488
122 T H 0.0000
123 L H 1.0814
124 V H 0.0000
125 T H -0.0818
126 V H 0.0000
127 S H -0.9452
128 S H -0.7959
1 D L -1.5527
2 I L 0.0000
3 V L 0.5856
4 M L 0.0000
5 T L -0.3628
6 Q L 0.0000
7 T L -0.0083
8 P L 0.4383
9 L L 1.1563
10 S L 0.1517
11 L L -0.1298
12 S L -0.7741
13 V L 0.0000
14 T L -1.3534
15 P L -1.4534
16 G L -1.7318
17 Q L -1.8852
18 P L -1.7342
19 A L 0.0000
20 S L -0.8275
21 I L 0.0000
22 S L -0.7851
23 C L 0.0000
24 R L -2.2709
25 S L 0.0000
26 S L -1.2204
27 K L -2.1112
28 S L -1.0275
29 L L 0.0000
30 L L 0.5210
31 H L -0.5722
32 R L -2.0131
34 N L -1.4568
35 A L -0.2934
36 I L 0.6325
37 T L 0.0000
38 Y L 0.5999
39 F L 0.0000
40 Y L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 L L 0.0000
44 H L -0.6253
45 K L -1.0180
46 P L -0.7395
47 G L -1.2952
48 Q L -1.7439
49 P L -1.1735
50 P L 0.0000
51 Q L -0.8020
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.2310
56 Q L 0.0000
57 M L 0.1924
65 S L -0.2831
66 N L -0.4002
67 L L -0.0213
68 A L -0.0094
69 S L -0.2997
70 G L -0.5875
71 V L -0.4354
72 P L -0.9145
74 D L -1.9383
75 R L 0.0000
76 F L 0.0000
77 S L -1.1550
78 G L -0.6605
79 S L -0.8127
80 G L -0.8532
83 S L -0.4647
84 G L -0.7137
85 T L -1.5146
86 D L -1.9109
87 F L 0.0000
88 T L -1.0372
89 L L 0.0000
90 K L -1.8768
91 I L 0.0000
92 S L -1.9474
93 R L -2.5177
94 V L 0.0000
95 E L -1.5420
96 A L -1.2024
97 E L -1.6761
98 D L 0.0000
99 V L -0.0637
100 G L 0.0000
101 V L 0.1761
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 A L 0.0000
106 Q L 0.0000
107 N L -0.2828
108 L L -0.2748
109 E L -1.2658
114 L L -0.0176
115 P L -0.6403
116 L L 0.0000
117 T L -0.1275
118 F L 0.0000
119 G L 0.0000
120 G L -0.5497
121 G L 0.0000
122 T L 0.0000
123 K L -0.4606
124 V L 0.0000
125 E L -0.7092
126 I L -0.6681
127 K L -1.6241
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Laboratory of Theory of Biopolymers 2018