| Chain sequence(s) |
A: EDEDEDEDEDEDGGKGHFG
B: EDEDEDEDEDEDGGKGHFG input PDB |
| Selected Chain(s) | A,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:31)
[INFO] Main: Simulation completed successfully. (00:00:32)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | A | -3.6828 | |
| 2 | D | A | -4.9795 | |
| 3 | E | A | -5.0903 | |
| 4 | D | A | -5.6523 | |
| 5 | E | A | -6.0919 | |
| 6 | D | A | -6.6364 | |
| 7 | E | A | -6.2769 | |
| 8 | D | A | -6.1618 | |
| 9 | E | A | -5.9914 | |
| 10 | D | A | -5.8043 | |
| 11 | E | A | -5.4015 | |
| 12 | D | A | -4.5392 | |
| 13 | G | A | -3.1996 | |
| 14 | G | A | -1.9922 | |
| 15 | K | A | -2.7492 | |
| 16 | G | A | -1.9301 | |
| 17 | H | A | -1.5689 | |
| 18 | F | A | -0.5968 | |
| 19 | G | A | -1.2040 | |
| 1 | E | B | -3.6261 | |
| 2 | D | B | -4.7886 | |
| 3 | E | B | -4.7660 | |
| 4 | D | B | -5.2866 | |
| 5 | E | B | -5.3299 | |
| 6 | D | B | -5.2785 | |
| 7 | E | B | -5.3147 | |
| 8 | D | B | -5.6971 | |
| 9 | E | B | -4.9783 | |
| 10 | D | B | -4.7038 | |
| 11 | E | B | -4.1513 | |
| 12 | D | B | -4.0056 | |
| 13 | G | B | -2.3589 | |
| 14 | G | B | -1.8784 | |
| 15 | K | B | -2.8781 | |
| 16 | G | B | -1.8266 | |
| 17 | H | B | -1.7767 | |
| 18 | F | B | -0.1205 | |
| 19 | G | B | -2.3000 |