Project name: 2d74dfe44446cd0

Status: done

Started: 2025-06-03 04:59:44
Settings
Chain sequence(s) H: QVQLVQSGSELKKPGASVKVSCKASGYTFTDNNMDWVRQAPGQGLEWMGDINTRSGGSIYNEEFQDRVIMTVDKSTDTAYMELSSLRSEDTATYHCARRKSYGYYLDEWGEGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCKASRNIERQLAWYQQKPGQAPELLIYQASRKESGVPDRFSGSRYGTDFTLTISSLQPEDIATYYCQQYSDPPLTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:13)
Show buried residues

Minimal score value
-3.4896
Maximal score value
1.0365
Average score
-0.7795
Total score value
-176.1567

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4097
2 V H -1.0583
3 Q H -1.3260
4 L H 0.0000
5 V H 0.0675
6 Q H -0.4712
7 S H -0.7275
8 G H -0.7640
9 S H -0.2500
11 E H -0.2546
12 L H 0.6784
13 K H -0.9869
14 K H -2.1572
15 P H -2.1272
16 G H -1.5147
17 A H -1.1924
18 S H -1.2570
19 V H 0.0000
20 K H -1.7915
21 V H 0.0000
22 S H -0.5008
23 C H 0.0000
24 K H -0.8282
25 A H 0.0000
26 S H -0.8424
27 G H -0.8982
28 Y H -0.7068
29 T H -0.7467
30 F H 0.0000
35 T H -2.0879
36 D H -2.4699
37 N H -1.5836
38 N H -1.3674
39 M H 0.0000
40 D H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.7456
45 A H -1.0861
46 P H -1.0439
47 G H -1.2200
48 Q H -1.7502
49 G H -1.1260
50 L H 0.0000
51 E H -0.6999
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 D H 0.0000
56 I H 0.0000
57 N H -1.5608
58 T H 0.0000
59 R H -2.8363
62 S H -1.4914
63 G H -1.4277
64 G H -0.9536
65 S H 0.0797
66 I H 0.1257
67 Y H -0.7018
68 N H 0.0000
69 E H -3.4896
70 E H -3.3409
71 F H 0.0000
72 Q H -2.7966
74 D H -2.8217
75 R H 0.0000
76 V H 0.0000
77 I H 0.5918
78 M H 0.0000
79 T H -0.1257
80 V H -0.9803
81 D H -1.3692
82 K H -2.0837
83 S H -1.1519
84 T H -1.1533
85 D H -1.6156
86 T H 0.0000
87 A H 0.0000
88 Y H -0.1572
89 M H 0.0000
90 E H -0.7213
91 L H 0.0000
92 S H -0.8877
93 S H -1.2068
94 L H 0.0000
95 R H -2.5813
96 S H -2.1344
97 E H -2.4036
98 D H 0.0000
99 T H -0.8151
100 A H 0.0000
101 T H -0.2606
102 Y H 0.0000
103 H H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.7636
107 R H -0.7514
108 K H -0.5923
109 S H -0.1265
110 Y H 1.0365
112 G H 0.3715
113 Y H 0.1635
114 Y H 0.0000
115 L H 0.0000
116 D H -0.9507
117 E H -1.3477
118 W H 0.0000
119 G H 0.0000
120 E H -2.1236
121 G H -1.0848
122 T H 0.0000
123 L H 0.1530
124 V H 0.0000
125 T H -0.3274
126 V H 0.0000
127 S H -0.9934
128 S H -0.8704
1 D L -2.6349
2 I L 0.0000
3 Q L -2.2224
4 M L 0.0000
5 T L -1.2135
6 Q L -0.9872
7 S L -0.7339
8 P L -0.5120
9 S L -0.6693
10 S L -0.7957
11 L L -0.6435
12 S L -1.0113
13 A L -1.0672
14 S L -0.8567
15 V L 0.1631
16 G L -0.8137
17 D L -1.8296
18 R L -2.3305
19 V L 0.0000
20 T L -0.6549
21 I L 0.0000
22 T L -0.6909
23 C L 0.0000
24 K L -2.2785
25 A L 0.0000
26 S L -2.1485
27 R L -2.9623
28 N L -3.0191
29 I L 0.0000
36 E L -2.9262
37 R L -2.4702
38 Q L -1.7840
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.0225
45 K L -1.3639
46 P L -0.9374
47 G L -1.5370
48 Q L -2.2572
49 A L -1.7461
50 P L 0.0000
51 E L -1.5598
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -1.0813
56 Q L -1.6992
57 A L 0.0000
65 S L -1.5719
66 R L -2.3133
67 K L -1.9424
68 E L -1.2487
69 S L -0.8671
70 G L -0.8533
71 V L -0.8718
72 P L -1.2032
74 D L -2.1093
75 R L -1.5090
76 F L 0.0000
77 S L -1.1179
78 G L -0.8679
79 S L -0.7554
80 R L -0.8218
83 Y L 0.2369
84 G L -1.0813
85 T L -1.7885
86 D L -1.1294
87 F L 0.0000
88 T L -0.4172
89 L L 0.0000
90 T L 0.0000
91 I L 0.0000
92 S L -1.6436
93 S L -1.3687
94 L L 0.0000
95 Q L -0.6390
96 P L -0.9733
97 E L -1.6989
98 D L 0.0000
99 I L -0.1876
100 A L 0.0000
101 T L -0.5998
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 S L -1.4155
109 D L -1.3080
114 P L -1.0719
115 P L -1.2411
116 L L 0.0000
117 T L -0.7940
118 F L -0.2845
119 G L 0.0000
120 G L -1.0519
121 G L 0.0000
122 T L 0.0000
123 K L -1.1192
124 V L 0.0000
125 E L -1.1563
126 I L -0.7598
127 K L -1.5897
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Laboratory of Theory of Biopolymers 2018