Project name: Nb_Hybrid

Status: done

Started: 2025-07-27 22:00:32
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGRTFSPYTWFRQAPGQGLEAVAIIGSDRSTDLDGDTRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAALTAKGYVFTDNEYDYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:40)
Show buried residues

Minimal score value
-2.8386
Maximal score value
1.7987
Average score
-0.7194
Total score value
-85.604

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.8578
2 V A -1.7329
3 Q A -1.3025
4 L A 0.0000
5 V A 1.2198
6 E A 0.0000
7 S A -0.1337
8 G A -0.6118
9 G A 0.1490
10 G A 0.6848
11 L A 1.3879
12 V A -0.0761
13 Q A -1.3909
14 P A -1.7440
15 G A -1.5200
16 G A -1.0473
17 S A -1.4841
18 L A -1.0863
19 R A -2.3351
20 L A 0.0000
21 S A -0.4591
22 C A 0.0000
23 A A -0.1599
24 A A 0.0000
25 S A -1.3928
26 G A -1.9982
27 R A -2.3000
28 T A -1.3041
29 F A -0.4924
30 S A -0.3016
31 P A -0.2684
32 Y A 0.0000
33 T A 0.0000
34 W A 0.0000
35 F A 0.0000
36 R A -0.2833
37 Q A -0.5602
38 A A -0.9499
39 P A -1.1715
40 G A -1.2046
41 Q A -1.7190
42 G A -0.9550
43 L A 0.1319
44 E A -0.7402
45 A A -0.3450
46 V A 0.0000
47 A A 0.0000
48 I A 0.0000
49 I A -1.0969
50 G A -1.3793
51 S A -1.6476
52 D A -2.8215
53 R A -2.8386
54 S A -1.6408
55 T A -0.9247
56 D A -1.1044
57 L A -0.3054
58 D A -1.0911
59 G A -1.0139
60 D A -0.9517
61 T A -0.8374
62 R A -1.1686
63 F A 0.0000
64 T A -0.9686
65 I A 0.0000
66 S A -0.9852
67 R A -1.7069
68 D A -2.2976
69 N A -2.5778
70 S A -2.0429
71 K A -2.7039
72 N A -2.1695
73 T A 0.0000
74 L A 0.0000
75 Y A -0.9018
76 L A 0.0000
77 Q A -1.7130
78 M A 0.0000
79 N A -1.9669
80 S A -1.4394
81 L A 0.0000
82 R A -2.6039
83 A A -1.8605
84 E A -2.3386
85 D A 0.0000
86 T A -0.4700
87 A A 0.0000
88 V A 0.8069
89 Y A 0.0000
90 Y A 0.4484
91 C A 0.0000
92 A A 0.0000
93 A A 0.0000
94 L A -1.0762
95 T A -1.0908
96 A A -1.0898
97 K A -1.1445
98 G A 0.1562
99 Y A 1.7331
100 V A 1.6401
101 F A 1.7987
102 T A -0.1107
103 D A -2.2188
104 N A -2.7785
105 E A -2.7688
106 Y A -1.7641
107 D A -1.8125
108 Y A -0.6052
109 W A 0.2184
110 G A 0.0866
111 Q A -0.5800
112 G A 0.1745
113 T A 0.6426
114 L A 1.5821
115 V A 0.0000
116 T A 0.3363
117 V A 0.0000
118 S A -0.7558
119 S A -0.5095
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Laboratory of Theory of Biopolymers 2018