Project name: 2dbc6999fccc340

Status: done

Started: 2025-06-03 05:16:07
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Chain sequence(s) H: EVQLVESGGGLVQPGGSLRLSCAASGFSLSNYNMGWVRQAPGKGLEWVSVIDASGTTYYATWAKGRFTISRDNSKNTLYLQMNSLRAEDTATYYCARELLYFGSSYYDLWGQGTLVTVSS
L: DVVMTQSPSTLSASVGDRVTITCQASQNIDSNLAWYQQKPGKAPKFLIYYASNLPFGVPSRFKGSGSGTEFTLTISSLQPDDFATYYCQSADVGSTYVAAFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:32)
Show buried residues

Minimal score value
-2.8341
Maximal score value
2.6587
Average score
-0.4736
Total score value
-108.9183

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.7742
2 V H -0.6615
3 Q H -0.8810
4 L H 0.0000
5 V H 0.9864
6 E H 0.3757
7 S H -0.1412
8 G H -0.4285
9 G H 0.1634
11 G H 0.8327
12 L H 1.3910
13 V H -0.0200
14 Q H -1.3332
15 P H -1.6337
16 G H -1.4304
17 G H -1.1360
18 S H -1.0799
19 L H -0.6586
20 R H -1.4242
21 L H 0.0000
22 S H -0.2564
23 C H 0.0000
24 A H -0.0346
25 A H 0.0000
26 S H -0.4779
27 G H -0.8869
28 F H -0.5113
29 S H -0.7633
30 L H 0.0000
35 S H -1.2156
36 N H -1.2584
37 Y H -0.1003
38 N H 0.0000
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.8040
45 A H -1.1363
46 P H -0.8890
47 G H -1.4510
48 K H -2.2694
49 G H -1.4181
50 L H 0.0000
51 E H -0.9397
52 W H 0.0000
53 V H 0.0000
54 S H 0.0000
55 V H 0.0000
56 I H 0.0000
57 D H -0.3712
58 A H -0.5493
59 S H -0.5556
63 G H -0.4757
64 T H -0.2197
65 T H 0.0173
66 Y H 0.1186
67 Y H -0.2324
68 A H 0.0000
69 T H -0.6482
70 W H -0.3398
71 A H 0.0000
72 K H -1.8198
74 G H -1.4136
75 R H -1.1567
76 F H 0.0000
77 T H -0.7489
78 I H 0.0000
79 S H -0.5380
80 R H -1.1922
81 D H -1.7811
82 N H -2.4801
83 S H -1.8787
84 K H -2.5090
85 N H -1.8998
86 T H -1.0691
87 L H 0.0000
88 Y H -0.4381
89 L H 0.0000
90 Q H -0.9980
91 M H 0.0000
92 N H -1.2409
93 S H -1.2021
94 L H 0.0000
95 R H -2.2882
96 A H -1.7008
97 E H -2.2236
98 D H 0.0000
99 T H -0.4174
100 A H 0.0000
101 T H 0.3074
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.2397
107 E H 0.0000
108 L H 0.8914
109 L H 1.8388
110 Y H 2.6587
111 F H 2.5860
112A G H 0.8480
112 S H 0.0000
113 S H 0.0000
114 Y H 0.3293
115 Y H 0.0000
116 D H -0.9551
117 L H -0.6456
118 W H 0.0000
119 G H 0.0000
120 Q H -1.3277
121 G H -0.4260
122 T H 0.4025
123 L H 1.3470
124 V H 0.0000
125 T H 0.3104
126 V H 0.0000
127 S H -0.5376
128 S H -0.5532
1 D L -1.4178
2 V L -0.4505
3 V L 1.0694
4 M L 0.0000
5 T L -0.1976
6 Q L 0.0000
7 S L -0.4668
8 P L -0.3821
9 S L -0.5793
10 T L -0.5213
11 L L -0.1380
12 S L -0.5589
13 A L 0.0000
14 S L -0.8375
15 V L -0.0323
16 G L -0.8457
17 D L -1.8079
18 R L -2.3232
19 V L 0.0000
20 T L -0.7577
21 I L 0.0000
22 T L -0.6069
23 C L 0.0000
24 Q L -1.4067
25 A L 0.0000
26 S L -0.9148
27 Q L -2.2369
28 N L -2.8341
29 I L 0.0000
36 D L -2.7190
37 S L -1.3879
38 N L -0.7009
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.5574
46 P L -1.0802
47 G L -1.6858
48 K L -2.6472
49 A L -1.7760
50 P L 0.0000
51 K L -1.9348
52 F L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.2374
56 Y L 0.1462
57 A L 0.0000
65 S L -0.6919
66 N L -0.5316
67 L L 0.3131
68 P L 0.7688
69 F L 1.6611
70 G L 0.5832
71 V L 0.1754
72 P L -0.2206
74 S L -0.7252
75 R L -1.2436
76 F L 0.0000
77 K L -1.8974
78 G L 0.0000
79 S L -0.8983
80 G L -1.0720
83 S L -1.5870
84 G L -2.1925
85 T L -2.1381
86 E L -2.2136
87 F L 0.0000
88 T L -0.8100
89 L L 0.0000
90 T L -1.1168
91 I L 0.0000
92 S L -1.7043
93 S L -1.2305
94 L L 0.0000
95 Q L -0.8163
96 P L -0.9291
97 D L -1.5940
98 D L 0.0000
99 F L 0.0558
100 A L 0.0000
101 T L -0.4587
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 S L 0.0000
107 A L 0.0000
108 D L -1.0267
109 V L 0.3296
110 G L -0.2459
112 S L -0.3386
113 T L -0.4795
114 Y L 0.0000
115 V L -0.1845
116 A L 0.0000
117 A L 0.0326
118 F L 0.1639
119 G L 0.0000
120 G L -0.7141
121 G L -0.8051
122 T L 0.0000
123 K L -0.8351
124 V L 0.0000
125 E L -0.3921
126 I L -0.4423
127 K L -1.4313
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Laboratory of Theory of Biopolymers 2018