| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSCAASGSISSITYLGWFRQAPGKEREGVAALVTYGGQTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAAYWGFWSAPLWNYDYEYWGQGTQVTV
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:05)
[INFO] Main: Simulation completed successfully. (00:01:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.3918 | |
| 2 | V | A | -0.9884 | |
| 3 | Q | A | -1.2307 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.5050 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.7103 | |
| 8 | G | A | -1.2258 | |
| 9 | G | A | -1.1856 | |
| 10 | G | A | -0.8769 | |
| 11 | S | A | -0.5787 | |
| 12 | V | A | -0.5678 | |
| 13 | Q | A | -1.3570 | |
| 14 | A | A | -1.4413 | |
| 15 | G | A | -1.3111 | |
| 16 | G | A | -1.0380 | |
| 17 | S | A | -1.3253 | |
| 18 | L | A | -1.1827 | |
| 19 | R | A | -2.2361 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4791 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.4250 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7220 | |
| 26 | G | A | -0.7787 | |
| 27 | S | A | -0.8422 | |
| 28 | I | A | 0.0000 | |
| 29 | S | A | -0.4671 | |
| 30 | S | A | 0.0218 | |
| 31 | I | A | 0.0000 | |
| 32 | T | A | 0.5625 | |
| 33 | Y | A | 0.0000 | |
| 34 | L | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | -1.5592 | |
| 39 | Q | A | -2.3916 | |
| 40 | A | A | -2.1515 | |
| 41 | P | A | -1.5024 | |
| 42 | G | A | -2.0286 | |
| 43 | K | A | -3.4815 | |
| 44 | E | A | -3.8178 | |
| 45 | R | A | -3.2813 | |
| 46 | E | A | -2.1144 | |
| 47 | G | A | -1.0123 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | L | A | 0.0000 | |
| 52 | V | A | 0.0000 | |
| 53 | T | A | -0.0561 | |
| 54 | Y | A | 0.6847 | |
| 55 | G | A | -0.4166 | |
| 56 | G | A | -0.7136 | |
| 57 | Q | A | -1.0278 | |
| 58 | T | A | -0.1439 | |
| 59 | Y | A | 0.5551 | |
| 60 | Y | A | -0.2906 | |
| 61 | A | A | -1.1352 | |
| 62 | D | A | -2.3125 | |
| 63 | S | A | -1.8000 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.4560 | |
| 66 | G | A | -1.8549 | |
| 67 | R | A | -1.7083 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8764 | |
| 70 | V | A | 0.0000 | |
| 71 | S | A | -0.5021 | |
| 72 | L | A | -0.7129 | |
| 73 | D | A | -1.6628 | |
| 74 | N | A | -2.2131 | |
| 75 | A | A | -1.7026 | |
| 76 | K | A | -2.4276 | |
| 77 | N | A | -1.9414 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.0000 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.5628 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.9200 | |
| 85 | S | A | -1.3913 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.2814 | |
| 88 | P | A | -1.7707 | |
| 89 | E | A | -2.2876 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0757 | |
| 92 | A | A | 0.0000 | |
| 93 | L | A | -0.7147 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.3895 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | A | A | 0.0000 | |
| 100 | Y | A | 0.2379 | |
| 101 | W | A | 1.3405 | |
| 102 | G | A | 1.3049 | |
| 103 | F | A | 2.6427 | |
| 104 | W | A | 2.0860 | |
| 105 | S | A | 0.9490 | |
| 106 | A | A | 0.2903 | |
| 107 | P | A | -0.0734 | |
| 108 | L | A | 0.0000 | |
| 109 | W | A | -0.5550 | |
| 110 | N | A | -1.6052 | |
| 111 | Y | A | -1.1791 | |
| 112 | D | A | -2.2968 | |
| 113 | Y | A | 0.0000 | |
| 114 | E | A | -1.8733 | |
| 115 | Y | A | -1.0399 | |
| 116 | W | A | -0.1992 | |
| 117 | G | A | -0.2355 | |
| 118 | Q | A | -0.9651 | |
| 119 | G | A | 0.0000 | |
| 120 | T | A | 0.0000 | |
| 121 | Q | A | -1.3160 | |
| 122 | V | A | 0.0000 | |
| 123 | T | A | -0.7830 | |
| 124 | V | A | -0.8882 |