Project name: query_structure

Status: done

Started: 2026-03-17 00:56:47
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Chain sequence(s) A: QVQLVESGGGSVQAGGSLRLSCAASGSISSITYLGWFRQAPGKEREGVAALVTYGGQTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAAYWGFWSAPLWNYDYEYWGQGTQVTV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:06)
Show buried residues

Minimal score value
-3.8178
Maximal score value
2.6427
Average score
-0.7006
Total score value
-86.8796

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3918
2 V A -0.9884
3 Q A -1.2307
4 L A 0.0000
5 V A 0.5050
6 E A 0.0000
7 S A -0.7103
8 G A -1.2258
9 G A -1.1856
10 G A -0.8769
11 S A -0.5787
12 V A -0.5678
13 Q A -1.3570
14 A A -1.4413
15 G A -1.3111
16 G A -1.0380
17 S A -1.3253
18 L A -1.1827
19 R A -2.2361
20 L A 0.0000
21 S A -0.4791
22 C A 0.0000
23 A A -0.4250
24 A A 0.0000
25 S A -0.7220
26 G A -0.7787
27 S A -0.8422
28 I A 0.0000
29 S A -0.4671
30 S A 0.0218
31 I A 0.0000
32 T A 0.5625
33 Y A 0.0000
34 L A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A -1.5592
39 Q A -2.3916
40 A A -2.1515
41 P A -1.5024
42 G A -2.0286
43 K A -3.4815
44 E A -3.8178
45 R A -3.2813
46 E A -2.1144
47 G A -1.0123
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 L A 0.0000
52 V A 0.0000
53 T A -0.0561
54 Y A 0.6847
55 G A -0.4166
56 G A -0.7136
57 Q A -1.0278
58 T A -0.1439
59 Y A 0.5551
60 Y A -0.2906
61 A A -1.1352
62 D A -2.3125
63 S A -1.8000
64 V A 0.0000
65 K A -2.4560
66 G A -1.8549
67 R A -1.7083
68 F A 0.0000
69 T A -0.8764
70 V A 0.0000
71 S A -0.5021
72 L A -0.7129
73 D A -1.6628
74 N A -2.2131
75 A A -1.7026
76 K A -2.4276
77 N A -1.9414
78 T A 0.0000
79 V A 0.0000
80 Y A 0.0000
81 L A 0.0000
82 Q A -1.5628
83 M A 0.0000
84 N A -1.9200
85 S A -1.3913
86 L A 0.0000
87 K A -2.2814
88 P A -1.7707
89 E A -2.2876
90 D A 0.0000
91 T A -1.0757
92 A A 0.0000
93 L A -0.7147
94 Y A 0.0000
95 Y A -0.3895
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 A A 0.0000
100 Y A 0.2379
101 W A 1.3405
102 G A 1.3049
103 F A 2.6427
104 W A 2.0860
105 S A 0.9490
106 A A 0.2903
107 P A -0.0734
108 L A 0.0000
109 W A -0.5550
110 N A -1.6052
111 Y A -1.1791
112 D A -2.2968
113 Y A 0.0000
114 E A -1.8733
115 Y A -1.0399
116 W A -0.1992
117 G A -0.2355
118 Q A -0.9651
119 G A 0.0000
120 T A 0.0000
121 Q A -1.3160
122 V A 0.0000
123 T A -0.7830
124 V A -0.8882
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Laboratory of Theory of Biopolymers 2018