Project name: srpp1

Status: done

Started: 2026-03-05 14:49:22
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Chain sequence(s) A: MAEEVEEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYYIPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVFGDEAS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:36)
Show buried residues

Minimal score value
-4.2403
Maximal score value
3.1258
Average score
-0.354
Total score value
-72.2105

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.3488
2 A A -0.5788
3 E A -2.1312
4 E A -2.5355
5 V A -1.3637
6 E A -3.5088
7 E A -3.8994
8 E A -4.2403
9 R A -4.1794
10 L A 0.0000
11 K A -2.6735
12 Y A -0.7025
13 L A -0.2336
14 D A -0.7786
15 F A 0.9801
16 V A 1.3792
17 R A 0.1948
18 A A 0.8052
19 A A 0.7532
20 G A 0.9759
21 V A 1.9117
22 Y A 1.3140
23 A A 1.2913
24 V A 2.1636
25 D A 0.1056
26 S A 1.3013
27 F A 2.5214
28 S A 1.2650
29 T A 0.9900
30 L A 1.3498
31 Y A 1.0992
32 L A 1.6371
33 Y A 1.1231
34 A A 0.7677
35 K A -0.0858
36 D A -0.5835
37 I A 1.2495
38 S A 0.4325
39 G A -0.0625
40 P A 0.1087
41 L A 0.5222
42 K A -0.7528
43 P A -0.7381
44 G A -0.4687
45 V A -0.6049
46 D A -1.3982
47 T A -0.7761
48 I A -0.4716
49 E A -1.3575
50 N A -1.7259
51 V A -0.4052
52 V A -0.4403
53 K A -1.3828
54 T A -0.6621
55 V A 0.0000
56 V A 1.1857
57 T A 1.1095
58 P A 1.4302
59 V A 2.5791
60 Y A 3.1258
61 Y A 3.0651
62 I A 2.6205
63 P A 1.0783
64 L A 0.5053
65 E A -0.8579
66 A A 0.1831
67 V A 0.3531
68 K A -1.1341
69 F A 0.8855
70 V A 0.9933
71 D A 0.0000
72 K A -0.7276
73 T A 0.7252
74 V A 0.6216
75 D A 0.2554
76 V A 1.5047
77 S A 0.0000
78 V A 0.6291
79 T A 0.1176
80 S A 0.1960
81 L A 0.2844
82 D A -1.2033
83 G A -0.2559
84 V A 1.3590
85 V A 0.9520
86 P A 0.7698
87 P A 0.2281
88 V A 1.0399
89 I A 0.3497
90 K A -1.4813
91 Q A -1.2153
92 V A -0.0983
93 S A -0.2313
94 A A -0.3208
95 Q A -0.6477
96 T A 0.1441
97 Y A 0.8259
98 S A 0.0685
99 V A 0.4547
100 A A 0.1964
101 Q A -1.2251
102 D A -0.9893
103 A A -0.3570
104 P A -0.6009
105 R A -1.4755
106 I A 0.0028
107 V A 0.7572
108 L A 0.5072
109 D A -0.7460
110 V A 0.4032
111 A A 0.6952
112 S A 0.2492
113 S A -0.1109
114 V A 0.0000
115 F A 1.2647
116 N A -0.4869
117 T A -0.7040
118 G A -0.3805
119 V A -0.1499
120 Q A -1.8955
121 E A -2.7291
122 G A 0.0000
123 A A -1.0163
124 K A -2.0420
125 A A -1.1096
126 L A -0.4840
127 Y A -0.1510
128 A A -0.8851
129 N A -1.5651
130 L A -1.3568
131 E A -2.4490
132 P A -2.4451
133 K A -2.9784
134 A A -1.8773
135 E A -2.2692
136 Q A -1.8725
137 Y A -0.7975
138 A A -0.4822
139 V A -0.1897
140 I A 0.3955
141 T A 0.1567
142 W A -0.5407
143 R A -1.7932
144 A A -0.4334
145 L A -0.1775
146 N A -1.4225
147 K A -2.0855
148 L A 0.0000
149 P A 0.0458
150 L A 0.6881
151 V A 0.0170
152 P A -0.6623
153 Q A -0.5929
154 V A 0.7526
155 A A 0.0000
156 N A -0.4553
157 V A 1.7852
158 V A 2.2762
159 V A 1.4229
160 P A 1.0854
161 T A 1.2250
162 A A 1.0985
163 V A 0.3989
164 Y A 1.0478
165 F A 0.4080
166 S A 0.0000
167 E A -1.7452
168 K A -1.5491
169 Y A -0.6925
170 N A -1.4908
171 D A -2.8333
172 V A -1.5969
173 V A 0.0000
174 R A -3.0566
175 G A -2.4720
176 T A -1.9930
177 T A -2.2782
178 E A -3.1909
179 Q A -2.6460
180 G A -1.8009
181 Y A -0.8250
182 R A -1.5674
183 V A 0.2380
184 S A 0.0000
185 S A -0.2351
186 Y A 1.1719
187 L A 0.8795
188 P A 0.9630
189 L A 0.5848
190 L A 0.3520
191 P A -0.6970
192 T A -1.2101
193 E A -2.7052
194 K A -2.1328
195 I A -1.1451
196 T A -2.0032
197 K A -3.0148
198 V A -1.8163
199 F A -1.4199
200 G A -2.1428
201 D A -3.0682
202 E A -3.5070
203 A A -2.1187
204 S A -1.6568
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Laboratory of Theory of Biopolymers 2018