Project name: query_structure

Status: done

Started: 2026-03-16 20:29:39
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Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWAFQWHIFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVGRHYTVYDSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:55)
Show buried residues

Minimal score value
-3.025
Maximal score value
1.8184
Average score
-0.6837
Total score value
-62.9036

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.3999
2 P A 0.2592
3 A A 0.1336
4 P A -0.8645
5 K A -1.9994
6 N A -1.1434
7 L A 0.3207
8 V A 1.7201
9 V A 0.9612
10 S A -0.5522
11 R A -2.0154
12 V A -1.0164
13 T A -1.7623
14 E A -3.0032
15 D A -2.6738
16 S A -2.0573
17 A A 0.0000
18 R A -1.1358
19 L A 0.0000
20 S A -0.0271
21 W A 0.0000
22 A A -0.7226
23 F A -0.6205
24 Q A -1.1577
25 W A 0.1310
26 H A -0.5621
27 I A -0.1942
28 F A 0.0000
29 D A -2.3724
30 S A -1.0639
31 F A 0.0000
32 L A 0.6832
33 I A 0.0000
34 Q A 0.4360
35 Y A 0.3028
36 Q A -1.0349
37 E A -2.1624
38 S A -1.6961
39 E A -2.8331
40 K A -2.4791
41 V A -0.1272
42 G A -1.1006
43 E A -1.5605
44 A A -0.3746
45 I A 0.7979
46 V A 1.5951
47 L A 1.1908
48 T A 0.3732
49 V A 0.0000
50 P A -1.2856
51 G A -1.4201
52 S A -1.3034
53 E A -1.9012
54 R A -1.4929
55 S A -0.8661
56 Y A -0.8697
57 D A -1.7216
58 L A 0.0000
59 T A -1.3505
60 G A -1.6194
61 L A 0.0000
62 K A -3.0250
63 P A -2.5276
64 G A -1.8513
65 T A -2.5349
66 E A -2.2136
67 Y A 0.0000
68 T A -0.0944
69 V A 0.0000
70 S A -0.0224
71 I A 0.0000
72 Y A -0.2622
73 G A 0.0000
74 V A 0.0000
75 G A 0.0000
76 R A -2.2554
77 H A -1.3879
78 Y A 0.2133
79 T A -0.0192
80 V A 0.4483
81 Y A 0.0021
82 D A -1.7902
83 S A -1.3885
84 N A -1.8432
85 P A -1.0486
86 L A 0.0000
87 S A 0.1369
88 A A 1.3945
89 I A 1.8184
90 F A 0.0000
91 T A -0.8704
92 T A -1.9438
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Laboratory of Theory of Biopolymers 2018