| Chain sequence(s) |
A: LPTIALLATGGTIAGSGASLGSYKSGELGVKELLKAIPSLNKIARIQQGEQQVSNIGSQDMNEEIWFKLAQQRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLHSTKPVVLVGAMRNASSSLSADGALNLYEAVSSVAVNEKSANNKGVLVVMDDTIFSVREEVVVKTHTTHVSTFKKALNSGAIGSVYYGKTRYYMQPLRKHTTESEEFSLSQLKTPLPKVDIIYTHAGMTPDLFQASLNSSHAKGVVIAGVGNGNVSAGFLKKAMQQEASQMGVVIVRSSRVGSGGVTSGEIDDKAYGFITSDNLNPQKKARVLLQLALTKTNNDKAKIQEEMFEEYD
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:34)
[INFO] Main: Simulation completed successfully. (00:03:36)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 5 | L | A | 0.6842 | |
| 6 | P | A | -0.0563 | |
| 7 | T | A | 0.0000 | |
| 8 | I | A | 0.0000 | |
| 9 | A | A | 0.0000 | |
| 10 | L | A | 0.0000 | |
| 11 | L | A | 0.0000 | |
| 12 | A | A | 0.0000 | |
| 13 | T | A | 0.0000 | |
| 14 | G | A | 0.0000 | |
| 15 | G | A | 0.0000 | |
| 16 | T | A | 0.0000 | |
| 17 | I | A | 0.0000 | |
| 18 | A | A | 0.0000 | |
| 19 | G | A | 0.0000 | |
| 20 | S | A | -1.1763 | |
| 21 | G | A | -0.9722 | |
| 24 | A | A | 0.2140 | |
| 25 | S | A | 0.9109 | |
| 26 | L | A | 1.6422 | |
| 27 | G | A | 0.3989 | |
| 28 | S | A | -0.0735 | |
| 29 | Y | A | -0.7263 | |
| 30 | K | A | -2.0466 | |
| 31 | S | A | -1.7447 | |
| 32 | G | A | -1.7317 | |
| 33 | E | A | -2.4680 | |
| 34 | L | A | -1.9312 | |
| 35 | G | A | -1.9167 | |
| 36 | V | A | 0.0000 | |
| 37 | K | A | -3.0880 | |
| 38 | E | A | -3.0454 | |
| 39 | L | A | 0.0000 | |
| 40 | L | A | -1.7947 | |
| 41 | K | A | -2.4783 | |
| 42 | A | A | -1.0086 | |
| 43 | I | A | -0.1938 | |
| 44 | P | A | -1.1240 | |
| 45 | S | A | -0.9373 | |
| 46 | L | A | 0.0000 | |
| 47 | N | A | -2.2095 | |
| 48 | K | A | -2.2233 | |
| 49 | I | A | -0.7712 | |
| 50 | A | A | 0.0000 | |
| 51 | R | A | -2.0455 | |
| 52 | I | A | -0.9525 | |
| 53 | Q | A | -1.2840 | |
| 54 | G | A | -1.2227 | |
| 55 | E | A | -1.1311 | |
| 56 | Q | A | -1.1974 | |
| 57 | V | A | 0.0000 | |
| 58 | S | A | -0.9335 | |
| 59 | N | A | -1.8349 | |
| 60 | I | A | -1.5146 | |
| 61 | G | A | -1.8117 | |
| 62 | S | A | 0.0000 | |
| 63 | Q | A | -2.2565 | |
| 64 | D | A | -2.5629 | |
| 65 | M | A | -1.6546 | |
| 66 | N | A | -1.6446 | |
| 67 | E | A | -1.7162 | |
| 68 | E | A | -2.5439 | |
| 69 | I | A | -1.6750 | |
| 70 | W | A | 0.0000 | |
| 71 | F | A | -1.7959 | |
| 72 | K | A | -2.4704 | |
| 73 | L | A | 0.0000 | |
| 74 | A | A | 0.0000 | |
| 75 | Q | A | -2.0991 | |
| 76 | R | A | -2.0821 | |
| 77 | A | A | 0.0000 | |
| 78 | Q | A | -2.0825 | |
| 79 | E | A | -2.6506 | |
| 80 | L | A | 0.0000 | |
| 81 | L | A | 0.0000 | |
| 82 | D | A | -3.0165 | |
| 83 | D | A | -2.3789 | |
| 84 | S | A | -1.8510 | |
| 85 | R | A | -2.4630 | |
| 86 | I | A | 0.0000 | |
| 87 | Q | A | -1.6220 | |
| 88 | G | A | 0.0000 | |
| 89 | V | A | 0.0000 | |
| 90 | V | A | 0.0000 | |
| 91 | I | A | 0.0000 | |
| 92 | T | A | 0.0000 | |
| 93 | H | A | 0.0000 | |
| 94 | G | A | 0.0000 | |
| 95 | T | A | 0.0000 | |
| 96 | D | A | -1.1229 | |
| 97 | T | A | -0.9822 | |
| 98 | L | A | 0.0000 | |
| 99 | E | A | 0.0000 | |
| 100 | E | A | -0.3511 | |
| 101 | S | A | 0.0000 | |
| 102 | A | A | 0.0000 | |
| 103 | Y | A | 0.0000 | |
| 104 | F | A | 0.0000 | |
| 105 | L | A | 0.0000 | |
| 106 | N | A | 0.0000 | |
| 107 | L | A | 0.0000 | |
| 108 | V | A | 0.0000 | |
| 109 | L | A | 0.0000 | |
| 110 | H | A | -1.0491 | |
| 111 | S | A | -1.1524 | |
| 112 | T | A | -1.0573 | |
| 113 | K | A | -1.5775 | |
| 114 | P | A | 0.0000 | |
| 115 | V | A | 0.0000 | |
| 116 | V | A | 0.0000 | |
| 117 | L | A | 0.0000 | |
| 118 | V | A | 0.0000 | |
| 119 | G | A | 0.0000 | |
| 120 | A | A | 0.0000 | |
| 121 | M | A | -0.7450 | |
| 122 | R | A | -0.6827 | |
| 123 | N | A | 0.0000 | |
| 124 | A | A | -0.2673 | |
| 125 | S | A | 0.1991 | |
| 126 | S | A | 0.7121 | |
| 127 | L | A | 1.5374 | |
| 128 | S | A | 0.4478 | |
| 129 | A | A | 0.0870 | |
| 130 | D | A | -0.1637 | |
| 131 | G | A | -0.0557 | |
| 132 | A | A | 0.3109 | |
| 133 | L | A | 1.0835 | |
| 134 | N | A | 0.0000 | |
| 135 | L | A | 0.0000 | |
| 136 | Y | A | 0.9746 | |
| 137 | E | A | 0.0000 | |
| 138 | A | A | 0.0000 | |
| 139 | V | A | 0.0000 | |
| 140 | S | A | 0.0000 | |
| 141 | V | A | 0.0000 | |
| 142 | A | A | 0.0000 | |
| 143 | V | A | -0.3264 | |
| 144 | N | A | -2.0266 | |
| 145 | E | A | -2.9444 | |
| 146 | K | A | -3.0806 | |
| 147 | S | A | 0.0000 | |
| 148 | A | A | -1.9086 | |
| 149 | N | A | -2.2584 | |
| 150 | K | A | 0.0000 | |
| 151 | G | A | -0.9179 | |
| 152 | V | A | 0.0000 | |
| 153 | L | A | 0.0000 | |
| 154 | V | A | 0.0000 | |
| 155 | V | A | 0.0000 | |
| 156 | M | A | 0.0000 | |
| 157 | D | A | -0.8169 | |
| 158 | D | A | -0.8109 | |
| 159 | T | A | -0.8133 | |
| 160 | I | A | 0.0000 | |
| 161 | F | A | 0.0000 | |
| 162 | S | A | 0.0000 | |
| 163 | V | A | 0.0000 | |
| 164 | R | A | 0.0000 | |
| 165 | E | A | -0.4454 | |
| 166 | V | A | 0.0000 | |
| 167 | V | A | -0.3708 | |
| 168 | K | A | -0.8717 | |
| 169 | T | A | -0.8200 | |
| 170 | H | A | -1.2627 | |
| 171 | T | A | -0.8055 | |
| 172 | T | A | -0.9413 | |
| 173 | H | A | -1.2599 | |
| 174 | V | A | -0.7218 | |
| 175 | S | A | -0.8864 | |
| 176 | T | A | 0.0000 | |
| 177 | F | A | 0.0000 | |
| 178 | K | A | -0.8592 | |
| 179 | A | A | -0.3381 | |
| 180 | L | A | 0.1235 | |
| 181 | N | A | -0.9279 | |
| 182 | S | A | -0.6000 | |
| 183 | G | A | -0.3498 | |
| 184 | A | A | -0.0050 | |
| 185 | I | A | 0.0000 | |
| 186 | G | A | 0.0000 | |
| 187 | S | A | -0.6091 | |
| 188 | V | A | 0.0000 | |
| 189 | Y | A | 0.7964 | |
| 190 | Y | A | 1.4199 | |
| 191 | G | A | 0.0176 | |
| 192 | K | A | -1.4286 | |
| 193 | T | A | -1.7163 | |
| 194 | R | A | -1.7544 | |
| 195 | Y | A | -0.3985 | |
| 196 | Y | A | 0.9233 | |
| 197 | M | A | 0.3703 | |
| 198 | Q | A | -0.5712 | |
| 199 | P | A | -0.1993 | |
| 200 | L | A | 0.6777 | |
| 201 | R | A | -1.1096 | |
| 202 | K | A | -1.8604 | |
| 203 | H | A | -1.4385 | |
| 204 | T | A | 0.0000 | |
| 205 | T | A | -1.5011 | |
| 206 | E | A | -2.4918 | |
| 207 | S | A | 0.0000 | |
| 208 | E | A | -1.6136 | |
| 209 | F | A | 0.0000 | |
| 210 | S | A | -0.6076 | |
| 211 | L | A | -0.8186 | |
| 212 | S | A | -1.0771 | |
| 213 | Q | A | -1.7990 | |
| 214 | L | A | -1.4353 | |
| 215 | K | A | -2.1655 | |
| 216 | T | A | -1.3832 | |
| 217 | P | A | -1.2786 | |
| 218 | L | A | 0.0000 | |
| 219 | P | A | -1.3470 | |
| 220 | K | A | -2.0225 | |
| 221 | V | A | 0.0000 | |
| 222 | D | A | -0.8428 | |
| 223 | I | A | 0.6689 | |
| 224 | I | A | 0.0000 | |
| 225 | Y | A | 1.2529 | |
| 226 | T | A | 0.0000 | |
| 227 | H | A | -0.7510 | |
| 228 | A | A | -0.4954 | |
| 229 | G | A | -0.6303 | |
| 230 | M | A | -0.3235 | |
| 231 | T | A | -0.6600 | |
| 232 | P | A | -0.7046 | |
| 233 | D | A | -1.3164 | |
| 234 | L | A | 0.5741 | |
| 235 | F | A | 0.0000 | |
| 236 | Q | A | -1.0954 | |
| 237 | A | A | -0.7685 | |
| 238 | S | A | 0.0000 | |
| 239 | L | A | -1.1586 | |
| 240 | N | A | -1.5445 | |
| 241 | S | A | -1.5591 | |
| 242 | H | A | -1.9046 | |
| 243 | A | A | 0.0000 | |
| 244 | K | A | -1.8012 | |
| 245 | G | A | 0.0000 | |
| 246 | V | A | 0.0000 | |
| 247 | V | A | 0.0000 | |
| 248 | I | A | 0.0000 | |
| 249 | A | A | 0.0000 | |
| 250 | G | A | 0.0000 | |
| 251 | V | A | -0.0688 | |
| 252 | G | A | -0.4651 | |
| 253 | N | A | -1.2644 | |
| 254 | G | A | 0.0000 | |
| 255 | N | A | -0.8658 | |
| 256 | V | A | -0.0698 | |
| 257 | S | A | -0.3463 | |
| 258 | A | A | -0.4098 | |
| 259 | G | A | -0.9735 | |
| 260 | F | A | 0.0000 | |
| 261 | L | A | -0.9404 | |
| 262 | K | A | -2.0688 | |
| 263 | A | A | -1.9671 | |
| 264 | M | A | 0.0000 | |
| 265 | Q | A | -1.9666 | |
| 266 | E | A | -2.5658 | |
| 267 | A | A | 0.0000 | |
| 268 | S | A | 0.0000 | |
| 269 | Q | A | -1.5207 | |
| 270 | M | A | -0.2336 | |
| 271 | G | A | -1.0328 | |
| 272 | V | A | -0.8452 | |
| 273 | V | A | 0.0000 | |
| 274 | I | A | 0.0000 | |
| 275 | V | A | 0.0000 | |
| 276 | R | A | 0.0000 | |
| 277 | S | A | 0.0000 | |
| 278 | S | A | 0.0000 | |
| 279 | R | A | -0.7288 | |
| 280 | V | A | 0.6293 | |
| 281 | G | A | -0.1401 | |
| 282 | S | A | -0.4493 | |
| 283 | G | A | -0.8548 | |
| 284 | G | A | -1.2552 | |
| 285 | V | A | 0.0000 | |
| 286 | T | A | -1.0994 | |
| 287 | S | A | -1.5961 | |
| 288 | G | A | -1.8203 | |
| 289 | E | A | -2.4755 | |
| 290 | I | A | 0.0000 | |
| 291 | D | A | -2.0313 | |
| 292 | D | A | 0.0000 | |
| 293 | K | A | -1.9793 | |
| 294 | A | A | -1.0057 | |
| 295 | Y | A | -1.1888 | |
| 296 | G | A | -1.2173 | |
| 297 | F | A | 0.0000 | |
| 298 | I | A | 0.0000 | |
| 299 | T | A | -0.8170 | |
| 300 | S | A | 0.0000 | |
| 301 | D | A | -1.3917 | |
| 302 | N | A | -1.2600 | |
| 303 | L | A | 0.0000 | |
| 304 | N | A | -0.7125 | |
| 305 | P | A | 0.0000 | |
| 306 | Q | A | -0.5233 | |
| 307 | K | A | 0.0000 | |
| 308 | A | A | 0.0000 | |
| 309 | R | A | -0.6858 | |
| 310 | V | A | 0.0000 | |
| 311 | L | A | 0.0000 | |
| 312 | L | A | 0.0000 | |
| 313 | Q | A | 0.0000 | |
| 314 | L | A | 0.0000 | |
| 315 | A | A | 0.0000 | |
| 316 | L | A | 0.0000 | |
| 317 | T | A | -1.2178 | |
| 318 | K | A | -2.0421 | |
| 319 | T | A | -1.9131 | |
| 320 | N | A | -2.5499 | |
| 321 | D | A | -2.7805 | |
| 322 | K | A | -2.2492 | |
| 323 | A | A | -2.0251 | |
| 324 | K | A | -2.9037 | |
| 325 | I | A | 0.0000 | |
| 326 | Q | A | -2.6319 | |
| 327 | E | A | -3.6022 | |
| 328 | M | A | 0.0000 | |
| 329 | F | A | 0.0000 | |
| 330 | E | A | -3.6970 | |
| 331 | E | A | -3.1267 | |
| 332 | Y | A | 0.0000 | |
| 1333 | D | A | -1.2310 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine