Project name: RADA16-I_8

Status: done

Started: 2026-06-25 06:29:35
Settings
Chain sequence(s) A: RADARADARADARADA
C: RADARADARADARADA
B: RADARADARADARADA
E: RADARADARADARADA
D: RADARADARADARADA
G: RADARADARADARADA
F: RADARADARADARADA
H: RADARADARADARADA
input PDB
Selected Chain(s) A,C,B,E,D,G,F,H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:47)
Show buried residues

Minimal score value
-4.1854
Maximal score value
0.0
Average score
-2.3002
Total score value
-294.4219

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -2.8110
2 A A -2.3877
3 D A -3.1157
4 A A -2.0833
5 R A -2.5250
6 A A 0.0000
7 D A -2.1625
8 A A 0.0000
9 R A -2.4846
10 A A 0.0000
11 D A -2.1405
12 A A -2.1362
13 R A -2.7850
14 A A -2.6128
15 D A -2.3181
16 A A -1.4333
1 R B -3.0533
2 A B -2.4454
3 D B -3.0657
4 A B -2.5341
5 R B -2.8209
6 A B 0.0000
7 D B -2.2470
8 A B 0.0000
9 R B -2.4803
10 A B 0.0000
11 D B -2.1811
12 A B 0.0000
13 R B -3.2087
14 A B -2.5729
15 D B -2.2257
16 A B -1.5333
1 R C -2.8536
2 A C -2.3618
3 D C -2.4547
4 A C -1.9062
5 R C 0.0000
6 A C 0.0000
7 D C -1.9791
8 A C -1.7009
9 R C -2.0586
10 A C 0.0000
11 D C -2.3074
12 A C 0.0000
13 R C -2.3079
14 A C -2.4612
15 D C -2.5362
16 A C -1.4095
1 R D -2.7397
2 A D -2.2932
3 D D -2.9505
4 A D -2.4772
5 R D -3.2058
6 A D 0.0000
7 D D -1.6949
8 A D -2.1791
9 R D -2.6352
10 A D 0.0000
11 D D -1.7910
12 A D -2.1828
13 R D -2.5982
14 A D -2.0236
15 D D -1.8912
16 A D -1.2766
1 R E -2.4706
2 A E -2.2785
3 D E -2.3002
4 A E -2.3059
5 R E -3.2742
6 A E 0.0000
7 D E -2.3205
8 A E -2.3318
9 R E -3.1607
10 A E 0.0000
11 D E -2.9643
12 A E -2.5540
13 R E -3.2150
14 A E -2.7595
15 D E -2.5516
16 A E -1.5015
1 R F -2.5559
2 A F -1.7281
3 D F 0.0000
4 A F -2.3843
5 R F -3.2351
6 A F -2.4627
7 D F -2.5724
8 A F -2.5598
9 R F -3.6546
10 A F -3.0201
11 D F -3.6961
12 A F -2.9769
13 R F -3.4439
14 A F -2.5491
15 D F -2.9767
16 A F -1.6315
1 R G -2.9029
2 A G -2.6575
3 D G -3.1126
4 A G -3.0643
5 R G -3.4300
6 A G -3.0342
7 D G -3.8456
8 A G -3.6674
9 R G -4.1854
10 A G -3.2657
11 D G -3.9313
12 A G -3.1821
13 R G -3.6152
14 A G -2.5708
15 D G -2.9754
16 A G -1.6028
1 R H -2.7930
2 A H -2.2944
3 D H -3.0598
4 A H -2.7857
5 R H -2.8781
6 A H -2.5069
7 D H -3.3095
8 A H -2.9551
9 R H -2.6564
10 A H -2.6458
11 D H -3.4141
12 A H -3.1410
13 R H -3.8836
14 A H -2.3909
15 D H -3.0501
16 A H -2.5386
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Laboratory of Theory of Biopolymers 2018