| Chain sequence(s) |
A: RADARADARADARADA
C: RADARADARADARADA B: RADARADARADARADA E: RADARADARADARADA D: RADARADARADARADA G: RADARADARADARADA F: RADARADARADARADA H: RADARADARADARADA input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:45)
[INFO] Main: Simulation completed successfully. (00:03:47)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -2.8110 | |
| 2 | A | A | -2.3877 | |
| 3 | D | A | -3.1157 | |
| 4 | A | A | -2.0833 | |
| 5 | R | A | -2.5250 | |
| 6 | A | A | 0.0000 | |
| 7 | D | A | -2.1625 | |
| 8 | A | A | 0.0000 | |
| 9 | R | A | -2.4846 | |
| 10 | A | A | 0.0000 | |
| 11 | D | A | -2.1405 | |
| 12 | A | A | -2.1362 | |
| 13 | R | A | -2.7850 | |
| 14 | A | A | -2.6128 | |
| 15 | D | A | -2.3181 | |
| 16 | A | A | -1.4333 | |
| 1 | R | B | -3.0533 | |
| 2 | A | B | -2.4454 | |
| 3 | D | B | -3.0657 | |
| 4 | A | B | -2.5341 | |
| 5 | R | B | -2.8209 | |
| 6 | A | B | 0.0000 | |
| 7 | D | B | -2.2470 | |
| 8 | A | B | 0.0000 | |
| 9 | R | B | -2.4803 | |
| 10 | A | B | 0.0000 | |
| 11 | D | B | -2.1811 | |
| 12 | A | B | 0.0000 | |
| 13 | R | B | -3.2087 | |
| 14 | A | B | -2.5729 | |
| 15 | D | B | -2.2257 | |
| 16 | A | B | -1.5333 | |
| 1 | R | C | -2.8536 | |
| 2 | A | C | -2.3618 | |
| 3 | D | C | -2.4547 | |
| 4 | A | C | -1.9062 | |
| 5 | R | C | 0.0000 | |
| 6 | A | C | 0.0000 | |
| 7 | D | C | -1.9791 | |
| 8 | A | C | -1.7009 | |
| 9 | R | C | -2.0586 | |
| 10 | A | C | 0.0000 | |
| 11 | D | C | -2.3074 | |
| 12 | A | C | 0.0000 | |
| 13 | R | C | -2.3079 | |
| 14 | A | C | -2.4612 | |
| 15 | D | C | -2.5362 | |
| 16 | A | C | -1.4095 | |
| 1 | R | D | -2.7397 | |
| 2 | A | D | -2.2932 | |
| 3 | D | D | -2.9505 | |
| 4 | A | D | -2.4772 | |
| 5 | R | D | -3.2058 | |
| 6 | A | D | 0.0000 | |
| 7 | D | D | -1.6949 | |
| 8 | A | D | -2.1791 | |
| 9 | R | D | -2.6352 | |
| 10 | A | D | 0.0000 | |
| 11 | D | D | -1.7910 | |
| 12 | A | D | -2.1828 | |
| 13 | R | D | -2.5982 | |
| 14 | A | D | -2.0236 | |
| 15 | D | D | -1.8912 | |
| 16 | A | D | -1.2766 | |
| 1 | R | E | -2.4706 | |
| 2 | A | E | -2.2785 | |
| 3 | D | E | -2.3002 | |
| 4 | A | E | -2.3059 | |
| 5 | R | E | -3.2742 | |
| 6 | A | E | 0.0000 | |
| 7 | D | E | -2.3205 | |
| 8 | A | E | -2.3318 | |
| 9 | R | E | -3.1607 | |
| 10 | A | E | 0.0000 | |
| 11 | D | E | -2.9643 | |
| 12 | A | E | -2.5540 | |
| 13 | R | E | -3.2150 | |
| 14 | A | E | -2.7595 | |
| 15 | D | E | -2.5516 | |
| 16 | A | E | -1.5015 | |
| 1 | R | F | -2.5559 | |
| 2 | A | F | -1.7281 | |
| 3 | D | F | 0.0000 | |
| 4 | A | F | -2.3843 | |
| 5 | R | F | -3.2351 | |
| 6 | A | F | -2.4627 | |
| 7 | D | F | -2.5724 | |
| 8 | A | F | -2.5598 | |
| 9 | R | F | -3.6546 | |
| 10 | A | F | -3.0201 | |
| 11 | D | F | -3.6961 | |
| 12 | A | F | -2.9769 | |
| 13 | R | F | -3.4439 | |
| 14 | A | F | -2.5491 | |
| 15 | D | F | -2.9767 | |
| 16 | A | F | -1.6315 | |
| 1 | R | G | -2.9029 | |
| 2 | A | G | -2.6575 | |
| 3 | D | G | -3.1126 | |
| 4 | A | G | -3.0643 | |
| 5 | R | G | -3.4300 | |
| 6 | A | G | -3.0342 | |
| 7 | D | G | -3.8456 | |
| 8 | A | G | -3.6674 | |
| 9 | R | G | -4.1854 | |
| 10 | A | G | -3.2657 | |
| 11 | D | G | -3.9313 | |
| 12 | A | G | -3.1821 | |
| 13 | R | G | -3.6152 | |
| 14 | A | G | -2.5708 | |
| 15 | D | G | -2.9754 | |
| 16 | A | G | -1.6028 | |
| 1 | R | H | -2.7930 | |
| 2 | A | H | -2.2944 | |
| 3 | D | H | -3.0598 | |
| 4 | A | H | -2.7857 | |
| 5 | R | H | -2.8781 | |
| 6 | A | H | -2.5069 | |
| 7 | D | H | -3.3095 | |
| 8 | A | H | -2.9551 | |
| 9 | R | H | -2.6564 | |
| 10 | A | H | -2.6458 | |
| 11 | D | H | -3.4141 | |
| 12 | A | H | -3.1410 | |
| 13 | R | H | -3.8836 | |
| 14 | A | H | -2.3909 | |
| 15 | D | H | -3.0501 | |
| 16 | A | H | -2.5386 |